Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq232 120 5e-23 seq385 118 2e-22 seq361 118 2e-22 seq97 114 2e-21 seq39 111 2e-20 seq300 105 1e-18 seq450 104 4e-18 seq392 104 4e-18 seq211 98.7 2e-16 >seq232 Length=366277 Score = 120 bits (132), Expect = 5e-23 Identities = 95/114 (83%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || ||||||||||| |||||||||||||| ||| | ||| |||||||||||||| Sbjct 97662 CTTCGTGACAACATCCAAGGTATCACCAAGCCAGCAATCAGGCGTTTGGCTCGTCGTGGT 97721 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 || ||||||||| |||||||| | ||||||| |||| |||| ||| | ||| Sbjct 97722 GGCGTCAAGCGTATCTCTGGACTCATCTATGAGGAGACCCGTGGCGTTCTTAAG 97775 >seq385 Length=65403 Score = 118 bits (130), Expect = 2e-22 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||||||||| |||||||||||||||||| | ||| |||| ||||| || Sbjct 36618 TCTTCGTGACAACATCCAAGGCATCACCAAGCCAGCTATCAGGCGTTTGGCACGTCGAGG 36559 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 |||||||||||| | || || || |||| ||||||| ||||| |||| | ||| Sbjct 36558 AGGAGTCAAGCGTATTTCAGGCCTGATCTACGAAGAGACTCGTGGTGTTCTCAAG 36504 >seq361 Length=207279 Score = 118 bits (130), Expect = 2e-22 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || |||||||| |||||||||||||| |||||| | ||| ||||||| ||||| Sbjct 74857 TCTTCGTGACAACATCCAGGGAATCACCAAGCCTGCTATCAGGCGTTTGGCTCGCCGTGG 74798 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 ||| ||||||||| |||| || ||| |||| || |||| |||| |||| | ||| Sbjct 74797 TGGTGTCAAGCGTATCTCAGGCTTGATCTACGAGGAGACCCGTGGTGTTCTCAAG 74743 >seq97 Length=235175 Score = 114 bits (126), Expect = 2e-21 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | |||||| || |||||||| || |||||||||||||| || Sbjct 1753 CGCCAAGCGTCACAGGAAGGTTCTTCGTGACAACATCCAGGGCATCACCAAGCCAGCCAT 1694 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||||||||| || || ||||||||| |||| || | ||||||| |||| Sbjct 1693 CAGGCGTCTGGCTCGTCGCGGAGGTGTCAAGCGTATCTCAGGTCTCATCTATGAGGAGAC 1634 Query 16552 TCGTGATGTTTTGAAG 16567 ||||| ||| || ||| Sbjct 1633 TCGTGGTGTCTTAAAG 1618 >seq39 Length=427513 Score = 111 bits (122), Expect = 2e-20 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||||||||| |||||||||||||| ||| | || ||||||| |||||| Sbjct 392988 CTTCGTGATAACATCCAAGGTATCACCAAGCCAGCAATCAGGCGGTTGGCTCGCCGTGGT 392929 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 || ||||||||| |||| ||| || |||| || |||| |||| ||| | ||| Sbjct 392928 GGTGTCAAGCGTATCTCAGGACTGATCTACGAGGAGACCCGTGGCGTTCTCAAG 392875 >seq300 Length=115093 Score = 105 bits (116), Expect = 1e-18 Identities = 103/130 (79%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| | | | || ||||| || |||||||| || |||||||||||||| | Sbjct 113231 CGCCAAGCGTCACAGGAAGGTC-CTTCGTGACAACATCCAGGGTATCACCAAGCCAGCCA 113289 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | | ||||||||||||||||| || ||||||||| |||| ||| | |||| || |||| Sbjct 113290 TTAGGCGTCTGGCTCGTCGTGGAGGTGTCAAGCGTATCTCAGGACTCATCTACGAGGAGA 113349 Query 16551 TTCGTGATGT 16560 |||| ||| Sbjct 113350 CCCGTGGTGT 113359 >seq450 Length=138164 Score = 104 bits (114), Expect = 4e-18 Identities = 96/119 (81%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || ||||| || ||||||||||| |||||||||||||| || Sbjct 68062 GCCAAGCGTCACAGGAAGGTC-CTTCGTGACAACATCCAAGGCATCACCAAGCCAGCCAT 68004 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | | |||||||| ||||| || |||||||||||| |||| || | |||| ||||||| Sbjct 68003 CAGACGTCTGGCACGTCGAGGAGGAGTCAAGCGTATCTCAGGCCTCATCTACGAAGAGA 67945 >seq392 Length=111265 Score = 104 bits (114), Expect = 4e-18 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || ||||| || |||||||| |||||||||||||| || || Sbjct 74430 GCCAAGCGTCACAGGAAGGTC-CTTCGTGACAACATCCAGGGAATCACCAAGCCTGCCAT 74488 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||| ||||||| |||||||| ||||||||| | || || || |||| || |||| Sbjct 74489 CAGACGTTTGGCTCGCCGTGGTGGTGTCAAGCGTATTTCAGGCCTGATCTACGAGGAGAC 74548 Query 16552 TCGTGATGTTTTGAAG 16567 |||| |||| | ||| Sbjct 74549 CCGTGGTGTTCTTAAG 74564 >seq211 Length=449243 Score = 98.7 bits (108), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || ||||||||||| || || ||||| || |||||||| ||||||||||||| Sbjct 307936 CTTCGTGACAACATCCAAGGCATAACAAAGCCTGCCATCCGTCGGTTGGCTCGTCGTGGA 307995 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 || ||||||||| | ||||| || |||| || |||| || | || |||||| Sbjct 307996 GGTGTCAAGCGTATTTCTGGTCTGATCTACGAGGAGACACGAGGGGTGTTGAAG 308049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074581014161