Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq26 706 0.0 seq7 574 6e-159 seq17 93.3 5e-14 seq106 86.0 8e-12 >seq26 Length=15232 Score = 706 bits (782), Expect = 0.0 Identities = 742/972 (76%), Gaps = 3/972 (0%) Strand=Plus/Plus Query 135358 CAACACTT-GGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGG 135416 |||||||| ||| || || || |||||||| || || || ||||| |||| | | Sbjct 1220 CAACACTTTGGGCACGCTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTG 1279 Query 135417 GTTGGTTTGGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTATCTGC-TTTATTGTT 135475 |||||||||| | ||||| ||||||||| | | || | | ||| |||||| || Sbjct 1280 GTTGGTTTGGTGTTTTAATGATCCCTACTCTTTTAACTGCAACAA-CTGTGTTTATTATT 1338 Query 135476 GCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCT 135535 || || | || || ||||| || || || ||||| || || || || || ||||||| Sbjct 1339 GCATTTGTAGCAGCTCCTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCC 1398 Query 135536 CTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGC 135595 || |||||||||| ||||| ||||||||||||||| | ||| || || || || || Sbjct 1399 CTGTTGTACGGAAACAACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGT 1458 Query 135596 CTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGT 135655 | |||||||| || ||||||||||| |||||| | ||||||||| |||| || |||||| Sbjct 1459 TTACACTTCTACCCAATCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGT 1518 Query 135656 CCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAG 135715 ||||| ||| |||| || | |||||| | | ||||| | | |||||||| || || Sbjct 1519 CCTTACCAATTAGTTGTATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAA 1578 Query 135716 TGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCT 135775 ||||| || |||| ||| | |||||||||||||||||| ||| |||||||| || || Sbjct 1579 TGGGAGCTTTCTTTCCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCA 1638 Query 135776 GTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGAT 135835 ||||| |||||||||||||| ||| | ||||||| | || ||||| ||||| ||||| Sbjct 1639 GTTGCAGCTGCTACTGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGAC 1698 Query 135836 GGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACAC 135895 |||||||| | || || || || |||||||||| ||| |||| ||||| || || ||| Sbjct 1699 GGTATGCCCTTAGGTATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCAC 1758 Query 135896 AACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTG 135955 ||||| | ||||| |||||||||||||| || ||||| || || || ||||||||||| Sbjct 1759 AACATCTTAATGCACCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTT 1818 Query 135956 TTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTA 136015 ||||||||||||||||| || | || || || | | ||||| || |||||| Sbjct 1819 TTCTCTGCTATGCATGGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAAC 1878 Query 136016 GAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCT 136075 |||| ||| | |||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1879 CAATCTGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 1938 Query 136076 GCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCG 136135 || || |||||||| || ||| |||| |||||||| || || ||||||||||| ||||| Sbjct 1939 GCGCACGGTTACTTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCT 1998 Query 136136 CTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTA 136195 ||||||| ||| | ||||| ||||| || || || ||||||||| |||| | || || Sbjct 1999 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATA 2058 Query 136196 TCTACGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAA 136255 || || ||||| || ||||| || || |||||||| ||||| || ||||| ||| || Sbjct 2059 TCAACTATGGCATTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAA 2118 Query 136256 GGTCGTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTG 136315 ||||||||| | ||||| ||||| || | | || |||||| || ||||||||||| Sbjct 2119 GGTCGTGTAATTAACACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTA 2178 Query 136316 ATGCACGAGCGT 136327 |||||||| ||| Sbjct 2179 ATGCACGAACGT 2190 >seq7 Length=22195 Score = 574 bits (636), Expect = 6e-159 Identities = 744/1028 (72%), Gaps = 0/1028 (0%) Strand=Plus/Plus Query 137850 AAACAGAGAGGATGGTTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTT 137909 ||| || | || ||||| ||| | ||||| ||| | || || || ||||| ||| Sbjct 4096 AAAGAGCGTGGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTT 4155 Query 137910 GTGGGTTGGTCTGGACTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTT 137969 || |||||||| || || |||| ||||| || || ||| | || | ||||| ||| | Sbjct 4156 GTAGGTTGGTCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTA 4215 Query 137970 ACTGGCACAACGTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTTATCTTGAA 138029 ||||| | || ||||| || ||||| || ||||| || || |||||| || ||| Sbjct 4216 ACTGGGATTACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAA 4275 Query 138030 GGCGCTAATTTCCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTT 138089 || ||||||| | || || || ||||| ||||| || | ||||||||||||| | Sbjct 4276 GGTTGTAATTTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTA 4335 Query 138090 CTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGA 138149 | | |||||||| || || ||||| ||| | || ||||| ||| | || || Sbjct 4336 TTGTTTCTTTGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGG 4395 Query 138150 CTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAG 138209 || ||| | ||||| || || || || || ||| | | ||||| || ||| | ||||| Sbjct 4396 CTTTGGGCATTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAA 4455 Query 138210 TTTGAGATCTCTCGTCTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCC 138269 ||||| || ||||| ||| | | ||||| ||||| || || || || || | || Sbjct 4456 TTTGAAATTGCTCGTTCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCT 4515 Query 138270 ATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTT 138329 || ||||| || || || || | || || || || ||||| || ||||||| ||| Sbjct 4516 ATTGCTGTTTTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTT 4575 Query 138330 GCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCAT 138389 ||||| |||||| | || ||||||| |||||| | | || | || || ||||| Sbjct 4576 GCTCCTAGTTTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCAC 4635 Query 138390 AACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTG 138449 |||||||| | ||||| || || |||||||| ||||| ||| | | |||| |||| || Sbjct 4636 AACTGGACTTTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTG 4695 Query 138450 CTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCA 138509 || ||||| ||||| ||||| || || ||||| ||| | | ||||||||| || || Sbjct 4696 CTTTGTGCGATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCA 4755 Query 138510 AATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCT 138569 || ||||| |||||| | || ||||||| ||||||||| || || | || || ||| Sbjct 4756 AACACTTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCT 4815 Query 138570 AACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTC 138629 || |||| |||||| ||||||||||| | |||||| || || || ||||||||||| Sbjct 4816 AATCGTTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTT 4875 Query 138630 TTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTT 138689 |||||| | ||||| || || | ||| | |||| ||| ||||| || | ||| | Sbjct 4876 TTTATGTTATTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTA 4935 Query 138690 GCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCT 138749 || | || |||||||| || ||||||||||| ||||||||||||||||||||||||||| Sbjct 4936 GCATTAAATCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCT 4995 Query 138750 GAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATG 138809 ||||| ||||| || ||||| || ||||||||| | || |||||| | ||||| |||||| Sbjct 4996 GAATTTGAGACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATG 5055 Query 138810 GCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGC 138869 ||| || ||||| || || ||||| |||| || ||||| || ||||| ||| | || Sbjct 5056 GCTGCTCAAGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGA 5115 Query 138870 AACGCTCT 138877 |||||||| Sbjct 5116 AACGCTCT 5123 >seq17 Length=65237 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 135635 GAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTC 135694 ||||| || | || || ||| ||| ||| |||| || | | ||| || | ||| | Sbjct 34214 GAGTGATTAGACAACGGCGGTTTTTACCAATTAGTTGTATGTTATTTCTTT-TAGGTCTA 34156 Query 135695 TTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATT 135754 | | ||||||| ||| || ||||||||||||| ||| | |||||||| |||||||| Sbjct 34155 TGTTGCTACATGGTTCGTGAATGGGAACTCTCTTCCCGTTTAGGTATGCGTACTTGGATT 34096 Query 135755 TGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGT 135795 |||| | |||| || || ||||| |||||||||||||| Sbjct 34095 GCTGTCCCCTACTATGCACCAGTTGCAGCTGCTACTGCTGT 34055 >seq106 Length=11392 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Minus Query 119466 GAGGTCGCCAAGTGGTAAGGCAGCGGGTTTTGGTCCCGCCATTCGTGGGTTCGAATCCTA 119525 || || |||||||||||||||||||||||||| ||||| |||||| ||||||||||||| Sbjct 2552 GACGTGGCCAAGTGGTAAGGCAGCGGGTTTTGATCCCGTTATTCGTAGGTTCGAATCCTA 2493 Query 119526 C--TCTCAG 119532 | |||||| Sbjct 2492 CCGTCTCAG 2484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627962685820800