Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq26 686 0.0 >seq26 Length=15232 Score = 686 bits (760), Expect = 0.0 Identities = 751/992 (76%), Gaps = 12/992 (1%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 || || || |||||||| ||||| | ||| | ||||| ||||||||||||||||| | Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCT 211689 |||||||| |||| || |||||||||| ||||| | ||||| | ||||| ||| Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAACAACTGTGTTTATTATTGCATTTGTAGCAGCTCCT 1356 Query 211690 CCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAAC 211749 || || || |||||||| || ||||| ||||| ||||||| | |||| || |||||| Sbjct 1357 CCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAAC 1416 Query 211750 ATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATC 211809 || ||||||||||| |||||||| ||||||| ||||| |||||||||||||| || ||| Sbjct 1417 ATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAATC 1476 Query 211810 TGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATC 211869 ||||||||||| || | ||||||||| | ||||| |||||||||||||| || || | Sbjct 1477 TGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 1536 Query 211870 TTCCAC--TTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927 | |||| || |||| | || | || |||||||| | | ||||| ||||| | || Sbjct 1537 TGCCACTTTTTCTTAGGTGTATGT-TGC-TACATGGGGCGTGAATGGGAGCTTTCTTTCC 1594 Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 ||||||||||||| |||||||| ||| ||||| || ||||| || |||| ||| | Sbjct 1595 GTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 1654 Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 |||| ||| || | ||||| ||||||| || || || ||||||||||| ||||||| Sbjct 1655 CTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTA 1714 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 | ||||| || || ||||| ||| | ||||||||||| || || |||||| | ||||||| Sbjct 1715 TCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACC 1774 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 | ||||| ||| ||||||||||||| | || ||||| | | |||||||||||||| | Sbjct 1775 CTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATG 1834 Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCA--CAG--AAC 212223 |||| | || || || ||| | ||||||||||| |||| ||| || | | ||| Sbjct 1835 GTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTG----AGAACCAATCTGCTAAC 1890 Query 212224 TATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATAC 212283 | |||||||| ||||| ||||||||||| || || ||||| |||||||| || || ||| Sbjct 1891 GAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTAC 1950 Query 212284 TTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTC 212343 || || | | || ||||| || || || ||||||||| | ||||||||||||| Sbjct 1951 TTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTC 2010 Query 212344 CTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCA 212403 | || ||||||| || | | | ||||| || || | ||||| | || |||||| Sbjct 2011 TTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCA 2070 Query 212404 TTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTT 212463 || |||||||| || |||||||| |||||||||||||| || | |||| || || Sbjct 2071 TTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATT 2130 Query 212464 CCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGA 212523 || |||| ||| || | ||| | || ||||| |||||||| || ||||||||| | Sbjct 2131 AACACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGT 2190 Query 212524 AATGCACACAACTTCCCACTTGACTTAGCATC 212555 || || ||||||||||||||||||||||| || Sbjct 2191 AACGCTCACAACTTCCCACTTGACTTAGCTTC 2222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807548366064120