Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq26 682 0.0 seq7 390 1e-103 >seq26 Length=15232 Score = 682 bits (756), Expect = 0.0 Identities = 745/987 (75%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 ||||||||||||||||| || ||||| || || |||||| |||||||||||||||| ||| Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCT-TGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| |||| ||||||| | || ||||| ||| | ||||| | || ||||| Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAACAACTGTGTTT-ATTATTGCATTTGTAGCAGCTCC 1355 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 ||| || || |||||||| || | || ||||| | ||||| | || || || ||||| Sbjct 1356 TCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAA 1415 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 ||| |||||||||||||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct 1416 CATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAAT 1475 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 |||||||||||| || | || |||||||| |||||||| ||||||||||| |||||| | Sbjct 1476 CTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 1535 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | |||||| | | || | | | ||||||||| | | ||||| || || | | | Sbjct 1536 ATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCCG 1595 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 |||| ||| | |||||||| |||||| ||||| ||||| || | || || ||| Sbjct 1596 TTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 1655 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 || ||| || | || || ||||||| || || || ||| |||||||| ||||||| Sbjct 1656 TGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTAT 1715 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 ||||||||| || ||||| ||| | || |||||||| || |||||||| |||||||||| Sbjct 1716 CTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 1775 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 171264 ||||| ||| |||||| |||||| | || |||||| ||| ||| ||| ||||| || Sbjct 1776 TTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATGG 1835 Query 171265 TTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGG 171324 ||| |||| || || || ||||| | || |||||||||||| | | ||| | || Sbjct 1836 TTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAGG 1895 Query 171325 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 171384 || || ||||| |||||||||||||| || |||||||||||||| || || ||||| || Sbjct 1896 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTGG 1955 Query 171385 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444 | || || ||||| || || || ||||||||||| ||||| |||||||||||| | || Sbjct 1956 GCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAGC 2015 Query 171445 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 171504 || || || ||||| | | ||||| || || | ||||| | || |||||||| || Sbjct 2016 TGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTAA 2075 Query 171505 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAAC 171564 ||| ||||| |||||||| ||||||||||||||||| | | || | | || Sbjct 2076 CCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAACAC 2135 Query 171565 ATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGC 171624 ||||| || || | ||| | || ||||| || ||||| || ||||| ||| | || || Sbjct 2136 ATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACGC 2195 Query 171625 ACACAACTTCCCACTAGACCTAGCATC 171651 |||||||||||||| ||| |||| || Sbjct 2196 TCACAACTTCCCACTTGACTTAGCTTC 2222 >seq7 Length=22195 Score = 390 bits (432), Expect = 1e-103 Identities = 701/1026 (68%), Gaps = 21/1026 (2%) Strand=Plus/Plus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 ||||||||| || | || ||||| || || | || ||||| ||| | ||||| || Sbjct 4123 GATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGGTCAGGTTTATTACTCTTT 4182 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 ||| || || || || | || || ||||| || | |||||| || || || ||| Sbjct 4183 CCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATTACTTTTGTAACTTCTTGG 4242 Query 171927 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTA 171986 || || || ||| | ||| | | || || || || || |||||||| ||||| Sbjct 4243 TATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAATTTCTTAACTGCTGCAGTT 4302 Query 171987 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAA 172046 ||||| || | | |||||||||| | ||||||| || |||||||| || || ||| Sbjct 4303 TCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCTTTGGGGACCAGAAGCTCAA 4362 Query 172047 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 172106 ||| || || |||||||||||||| || || ||| |||||||| | |||||| Sbjct 4363 TCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGCATTTGTAGCTCTTCATGGA 4422 Query 172107 GTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATA 172166 | |||| | || ||||| ||| | | || ||||| ||||| | || | | Sbjct 4423 GCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAATTGCTCGTTCAGTAAGACTT 4482 Query 172167 CGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTTTCTA 172226 ||||||||||| || | || || |||||| |||||| || || | ||| || Sbjct 4483 CGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGTTTTTGTTTCTGTTTTTTTA 4542 Query 172227 ATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATC 172286 || || || ||||||||| | ||||||| || || ||| |||||| | || ||||| Sbjct 4543 ATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAGTTTTGGTATTGCTTCAATC 4602 Query 172287 TTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATG 172346 ||||| | ||| | || | || || |||||||| ||| | || || || || ||| Sbjct 4603 TTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGACTTTAAACCCTTTCCACATG 4662 Query 172347 ATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTA 172406 ||||| ||||| ||| || | |||| || || || ||||| || || |||||||| || Sbjct 4663 ATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGCGATTCACGGTGCAACTGTT 4722 Query 172407 CAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACT 172466 | ||||| | | |||||| || | | | | ||| | ||| Sbjct 4723 GAAAACACTCTTTTTGAAGA---------------TG--GTGATGGTGCAAAC----ACT 4761 Query 172467 TTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAACAGA 172526 ||| | ||||| | || || || | ||||||||| || | | | || ||||| | Sbjct 4762 TTCCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGT 4821 Query 172527 TTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATG 172586 |||||||| || || |||||| |||| |||||||||||| ||| | ||||| ||||| Sbjct 4822 TTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATG 4881 Query 172587 TTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCACTT 172646 || || || || || | ||| | |||| | | ||| | |||||| | ||| | Sbjct 4882 TTATTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCATTA 4941 Query 172647 AACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTT 172706 || || |||| ||||| || ||||||||||| || | ||||||||||| || || ||| Sbjct 4942 AATCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATTT 5001 Query 172707 GAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCT 172766 || || || ||||| || ||||||||| | || |||||||| | ||||||||| | || Sbjct 5002 GAGACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGCT 5061 Query 172767 GTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCA 172826 ||||| || ||||| || |||| ||||| || || || || ||||| || ||||| Sbjct 5062 CAAGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGCT 5121 Query 172827 CTATAA 172832 || ||| Sbjct 5122 CTTTAA 5127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570263974100280