Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq264 116 3e-21 seq33 107 2e-18 seq386 96.9 3e-15 >seq264 Length=364395 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | ||| | ||| |||||||| || |||||||| || Sbjct 31794 GCCACCACGCAGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 31735 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| | ||||||||| || |||| | |||||||||||| ||||| Sbjct 31734 CAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 31675 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||||| | || | || || | ||||| | Sbjct 31674 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAAC 31615 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || ||||| | || || || || || |||||| Sbjct 31614 CTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCATG 31566 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| || ||||| | || |||||||| || |||||||| ||| Sbjct 31228 CCACCACGCAGACGCAGGACCAAATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCA 31169 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| ||||| Sbjct 31168 AGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 31109 Query 131128 ATTCCT 131133 || ||| Sbjct 31108 ATACCT 31103 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| |||| ||||| ||| | || | ||| || ||||| ||||||||||| || Sbjct 32667 AGCCACCACGCAGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAG 32608 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||||| ||||| ||||| ||||| || |||| | |||||||||||| |||| Sbjct 32607 CCAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAG 32548 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || ||||| || || ||||| | || | || || | ||||||| Sbjct 32547 GGATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGA 32488 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || | || || || || || |||||| Sbjct 32487 CCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATG 32438 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| || || ||||| | || |||||||| || |||||||| || Sbjct 32438 GCCACCACGCAGACGAAGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGC 32379 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || ||||| ||||||||||| || |||| | |||||||||||| ||||| Sbjct 32378 CAAGGTACGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 32319 Query 131127 GATTCCT 131133 ||| ||| Sbjct 32318 GATGCCT 32312 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| || || | ||| | || |||||||| ||||||||||| || Sbjct 31566 GCCACCACGCAGACGAAGGACCAGATGCAATGTGGACTCCTTCTGAATGTTGTAGTCAGC 31507 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| ||||||||||| || |||| |||||||||||||| || || Sbjct 31506 AAGAGTACGACCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGTGG 31447 Query 131127 GATTCCT 131133 ||| ||| Sbjct 31446 GATGCCT 31440 >seq33 Length=490745 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | ||| | ||| || ||||| ||||||||||| || Sbjct 196170 GCCACCACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGC 196111 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||||| ||||||||||| || |||| || ||||||||||| ||||| Sbjct 196110 CAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGG 196051 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || || |||| | || | || || | ||||| | Sbjct 196050 AATACCCTCCTTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCAC 195991 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | ||| || || || ||||| || || || || |||||| || Sbjct 195990 TTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCATGCCT 195939 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| |||| ||| || || | || | ||| |||||||| || ||||||||||| Sbjct 197535 AGCCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAG 197476 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||||| ||||| ||||||||||| || |||| | |||||||||||| |||| Sbjct 197475 CCAAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAG 197416 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || || || ||||| || || ||||| | || | || || | ||||| | Sbjct 197415 GAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCA 197356 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | || || || || || || || || || ||||||||| || Sbjct 197355 CCTCCAGTGTGATTGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATGCCT 197303 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||||||||| ||||| | || |||||||| || |||||||| || Sbjct 196740 GCCTCCACGCAGACGCAGCACCAAATGCAATGTGGACTCCTTCTGGATGTTGTAGTCTGC 196681 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || |||| | |||||||||||| ||||| Sbjct 196680 CAAAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 196621 Query 131127 GATTCCT 131133 ||| ||| Sbjct 196620 GATACCT 196614 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||||||||| || || | ||| ||||| || || |||||||| || Sbjct 197306 GCCTCCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGC 197247 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||||| ||||||||||| || |||| | |||||||||||| ||||| Sbjct 197246 CAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 197187 Query 131127 GATTCCT 131133 ||| ||| Sbjct 197186 GATACCT 197180 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||| || | ||| | ||| |||||||| || |||||||| ||| Sbjct 195595 CCTCCGCGAAGTCGCAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 195536 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| || | || |||||||||||||| || ||| Sbjct 195535 AGTGTACGTCCGTCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCAGGTGGG 195476 Query 131128 ATTCCT 131133 || ||| Sbjct 195475 ATGCCT 195470 >seq386 Length=203426 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 145624 GGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTC 145683 ||| || || |||| || || || || | || || | | | |||| | || ||||| Sbjct 96882 GGCAATGGATGCCAGGTTGCAGACAGCTGATTCTTCAGGGCTGGTGTACTCCACAATCTC 96823 Query 145684 GGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCA 145743 | ||| | |||||| || |||||||| ||||| ||||||||||| || | |||||| Sbjct 96822 AGTGCAGAGATTGCTGCACTTGATGGTGCCCAGGTTTTGCTGATTGGACTTGCGGTTGCA 96763 Query 145744 CGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGC 145786 ||||||||| |||||||| || ||||||||| |||||| Sbjct 96762 GCTGTCCTTGTACAGCATGTATGGGTTGCCAGTCTCAACCTGC 96720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008805591680