Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq264 116 3e-21 seq33 98.7 8e-16 >seq264 Length=364395 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || ||||||||||| || ||||||||||| ||| Sbjct 31793 CCACCACGCAGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 31734 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | |||||||| || ||||| ||| | || || ||||| ||||| ||| Sbjct 31733 AAGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 31674 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| ||| | ||| || | | | | ||||| | ||| Sbjct 31673 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAACC 31614 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || ||||||| || |||||||| || ||||| Sbjct 31613 TCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31567 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| ||||| || ||||||||||| |||| || | ||||||| ||| Sbjct 32641 TGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGTCCATCCTCCAGCTGT 32582 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || || ||||| ||||| ||| | |||||| ||||| ||| | Sbjct 32581 TTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTA 32522 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | ||||| | ||| |||| |||||||| || || ||| Sbjct 32521 GACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCAGTC 32462 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || ||||| Sbjct 32461 AAGGTCTTGACAAAGATTTGCAT 32439 >seq33 Length=490745 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || ||||| ||||| || ||||||||||| ||| Sbjct 196169 CCACCACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCC 196110 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | || ||||| ||| | || | |||||| ||||| ||| Sbjct 196109 AAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGA 196050 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | || || | | | | ||||| | |||| | Sbjct 196049 ATACCCTCCTTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACT 195990 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || ||||| || |||||||| || ||||| Sbjct 195989 TCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||| || |||| || | | ||| Sbjct 197518 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCC 197459 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| ||| | || || ||||| ||||| ||| | |||||| ||||| Sbjct 197458 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 197399 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | ||||| | |||| |||| ||||| || Sbjct 197398 TGAATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTC 197339 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| |||||||| Sbjct 197338 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 197307 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 196739 CCTCCACGCAGACGCAGCACCAAATGCAATGTGGACTCCTTCTGGATGTTGTAGTCTGCC 196680 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | || | | ||||||| || ||||| ||| | || || ||||| ||||| Sbjct 196679 AAAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 196627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405084657644230