Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq33 136 3e-27 seq47 91.5 1e-13 >seq33 Length=490745 Score = 136 bits (150), Expect = 3e-27 Identities = 161/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| |||| || || ||||||| | ||||||||||| || Sbjct 195943 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGAAGTGGAGTCATCA 196002 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || || | || | ||| ||||| || || ||||| |||||| Sbjct 196003 GACACCATTGA--CAATGTCAAATCCAAGATTCA-GGACAAGGAGGGTATTCCTCCTGAC 196059 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||||| | || ||||| ||||| || | || |||| || ||| ||| || ||| Sbjct 196060 CAGCAGCGGTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGGCAGACTAC 196119 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || |||||||| || ||| | ||||| Sbjct 196120 AACATTCAGAAGGAATCCACCCTCCATCTGGTGCT 196154 >seq47 Length=350483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| ||||||||||| || ||||| | || ||||| ||||| || || || Sbjct 106493 GACAAAGAAGGCATTCCACCTGATCAGCAGCGCCTCATCTTTGCTGGCAAGCAGTTGGAG 106434 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | ||| ||| || ||||| ||||| || ||||| || ||||| | ||| | Sbjct 106433 GATGGCAGGACTTTGGCAGACTACAACATTCAGAAGGAATCAACCTTACATCTTGTGTTG 106374 Query 25212 AGGCTAAG 25219 ||||| || Sbjct 106373 AGGCTCAG 106366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324424637755