Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq26 711 0.0 seq7 594 6e-165 >seq26 Length=15232 Score = 711 bits (788), Expect = 0.0 Identities = 752/988 (76%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 166044 TTGGGAATCCTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTT 166103 ||||| | ||| || || ||||| || || || | |||||| | || |||||||||| Sbjct 1227 TTGGGCACGCTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTT 1286 Query 166104 TGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCG 166162 ||| | ||||| || ||||| || | |||| || |||| || || | || || | Sbjct 1287 TGGTGTTTTAATGATCCCTACTCTTTTAACTGCAA-CAACTGTGTTTATTATTGCATTTG 1345 Query 166163 TAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGT 166222 |||| || |||||||| || ||||| || || |||||||| || | || || || ||| Sbjct 1346 TAGCAGCTCCTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGT 1405 Query 166223 ATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACT 166282 | || |||||||| ||||||||||||||||| || | || || ||||||||| | |||| Sbjct 1406 ACGGAAACAACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACT 1465 Query 166283 TCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCC 166342 |||| || |||||||||||||| || | ||||| ||| | || ||||||||||||| || Sbjct 1466 TCTACCCAATCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACC 1525 Query 166343 AGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAAT 166402 | | || || | |||||| || | || | | | ||||||||| ||||||||||| Sbjct 1526 AATTAGTTGTATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGC 1585 Query 166403 TGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAG 166462 | |||| ||| | |||||||| ||||||||| ||||| ||||||||||| ||||||| Sbjct 1586 TTTCTTTCCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAG 1645 Query 166463 CAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGC 166522 | || | || || ||| | |||| ||| |||||||||| ||||| ||||| |||| Sbjct 1646 CTGCTACTGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGC 1705 Query 166523 CCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCC 166582 || | |||||| || || || |||| ||| |||| |||||||| |||||||||||| Sbjct 1706 CCTTAGGTATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCT 1765 Query 166583 TCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGG 166642 | |||||||| ||||| ||| | ||||| ||||||||||| ||||| || |||||||| | Sbjct 1766 TAATGCACCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTG 1825 Query 166643 CAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCTC 166702 | ||||| || | || ||||| || | ||||||| || ||||| | | ||| Sbjct 1826 CTATGCATGGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTG 1885 Query 166703 AAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATG 166762 ||| | |||||||| || |||||||||||||| || |||||||| || ||||| || | Sbjct 1886 CTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACG 1945 Query 166763 GTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACT 166822 ||||||| || || |||| |||||||||||||| ||||||||||| || || | |||| Sbjct 1946 GTTACTTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACT 2005 Query 166823 TCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCA 166882 ||||| | || |||||||| || || || ||||||||||||||| | ||| | || | Sbjct 2006 TCTTCTTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTA 2065 Query 166883 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTG 166942 ||||||| ||||| |||||||||||||| ||||| || | | || ||| ||||||| Sbjct 2066 TGGCATTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTG 2125 Query 166943 TGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACG 167002 | | ||||| ||||| || | ||||||||||| || |||||||| |||||||||| Sbjct 2126 TAATTAACACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACG 2185 Query 167003 AGCGTAATGCTCACAACTTCCCTCTGGA 167030 | ||||| |||||||||||||| || || Sbjct 2186 AACGTAACGCTCACAACTTCCCACTTGA 2213 >seq7 Length=22195 Score = 594 bits (658), Expect = 6e-165 Identities = 743/1019 (73%), Gaps = 0/1019 (0%) Strand=Plus/Plus Query 167294 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGG 167353 || ||||||||| | ||||| ||| | |||||||| ||||| ||||| || ||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 167354 TCTGGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACG 167413 || || ||| | || ||||| || || ||||| || | ||||| ||| | ||||| | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 167414 ACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAAT 167473 || ||||| || |||||||| ||||| || || |||||| ||| || ||| |||| Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAAT 4284 Query 167474 TTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT 167533 || | || || ||||| |||||||| || || ||||||||||||| | | | ||| Sbjct 4285 TTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCTT 4344 Query 167534 TGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCT 167593 ||||| || || |||| ||||| | | |||| || | || || || ||||| Sbjct 4345 TGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGCA 4404 Query 167594 TTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATA 167653 ||||| || || || ||||| |||||| | || || |||||| | || |||||||| || Sbjct 4405 TTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAATT 4464 Query 167654 AGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTC 167713 | | |||| | | |||||||||||||| ||||| ||||| | || |||||||| Sbjct 4465 GCTCGTTCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGTT 4524 Query 167714 TTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCG 167773 ||||| ||||||||| | || || || | || ||||| ||||||| ||||| || Sbjct 4525 TTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAGT 4584 Query 167774 TTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACG 167833 |||||| |||| | || ||| ||||| | || || | || || ||||| |||||||| Sbjct 4585 TTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGACT 4644 Query 167834 CTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCA 167893 | ||||||||||| ||||||||||| |||||| | |||| | ||| ||||||| ||| Sbjct 4645 TTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGCG 4704 Query 167894 ATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTC 167953 || || |||| || || || || ||||| | |||||||||||| |||||||||||| Sbjct 4705 ATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACACTTTC 4764 Query 167954 AAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTC 168013 |||||| | | ||||| | ||| ||||| || || | || || ||||| || ||| Sbjct 4765 CGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGTTTC 4824 Query 168014 TGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTT 168073 ||||||||||| |||||| | ||||| || || || ||| | ||||| |||||| | Sbjct 4825 TGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATGTTA 4884 Query 168074 TTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAAT 168133 || || || || | || | |||| ||| | ||||| | | ||| | ||| | ||| Sbjct 4885 TTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCATTAAAT 4944 Query 168134 CTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAA 168193 || || ||||| || || || ||||| ||| || | |||||||| ||||| || ||||| Sbjct 4945 CTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATTTGAG 5004 Query 168194 ACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTA 168253 ||||| || || |||||||| || | || ||||| | ||||| ||||||||| | | Sbjct 5005 ACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGCTCAA 5064 Query 168254 GACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || ||||||||||| |||||||||| || || ||||| ||| | || |||||||| Sbjct 5065 GATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGCTCT 5123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567227199799200