Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq67 109 6e-19 seq301 82.4 9e-11 seq211 82.4 9e-11 >seq67 Length=277217 Score = 109 bits (120), Expect = 6e-19 Identities = 133/176 (76%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 93079 ATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCAT 93137 |||||||| ||||| |||||||| ||||| || ||||| || | || | |||||||||| Sbjct 72593 ATTGTACAGCAAGCATGCAAAGTCTGTATGCAAGCCTTCATCCC-TGCTGATCAACTCAT 72535 Query 93138 TGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAA 93196 |||||||||| | |||||| | || |||||| ||||| ||||| || | || |||| ||| Sbjct 72534 TGCTGAATGTGAGACCTGGCATCAATCCTCGCTTCTTAAGCCAGAAGA-TGGAGCAGAAA 72476 Query 93197 CTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA 93252 || || || || |||||||| ||||| |||| | ||||| ||||| Sbjct 72475 CTGCCGCTGAAGTGGATTCCTTCCACACAAGCAAAGCCCACTAGCCGTTCTGCAAA 72420 >seq301 Length=274210 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | | | | ||| Sbjct 35804 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCACGTATGTGGGCG 35863 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| ||||||| Sbjct 35864 TGGGTTCAAATCCCACTCCTGACA 35887 >seq211 Length=449243 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/89 (82%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 126262 TACA-GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGG 126318 |||| |||||| ||||||||||||||||||||||||| | ||| |||||| | | | Sbjct 96323 TACATGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCACGTATGT 96264 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACA 126347 | |||||||||| || ||||| ||||||| Sbjct 96263 GGGCGTGGGTTCAAATCCCACTCCTGACA 96235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856087565480