Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq200 118 2e-21 seq370 102 2e-16 seq82 100 6e-16 seq67 98.7 2e-15 seq373 96.9 7e-15 >seq200 Length=180262 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 280158 AACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTC 280217 ||||| || | | |||||||||| | ||||| || || ||||| || | || || | Sbjct 15601 AACTCTCGCGTGGCTGTCATTGGAGCAAATGGAGCTGGCAAGTCCACAATGATTAAGCTG 15660 Query 280218 CTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATG 280277 || ||||| ||| | ||| ||| || | || |||||||| |||||| || | || Sbjct 15661 CTCACTGGAGAGCTGGAAACCAATGAAGGCACAGTGTGGAAGCACCCCAACTTGAGAGTG 15720 Query 280278 GCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAAC 280337 || ||||| |||||||| || ||||||||||| ||| | ||||| |||| ||| || ||| Sbjct 15721 GCCTACGTGGCTCAGCATGCATTCCACCACATTGAGCAGCACCTAGACAAGACCCCCAAC 15780 Query 280338 CAATACATTCAGTGGCGCTATGC 280360 | |||||| |||| | || || Sbjct 15781 GACTACATTGCGTGGAGATACGC 15803 Score = 102 bits (112), Expect = 2e-16 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 279384 GGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGT 279443 ||||| ||||| ||||| ||| | ||||| || ||||||||||||| || || ||| Sbjct 13624 GGTGGCAAGATCCTGCTCAACAACGCTCGCCTGCACCTCAAGCGTGGCAAGCGTTACGGT 13683 Query 279444 CTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAG 279503 || ||| ||||| || || || ||| ||||| ||| | |||| || ||||| ||| Sbjct 13684 CTGTGCGGCCCCAACGGCGCAGGCAAGTCGACTCTCATGAGGTCCATCGCCAACGGCCAG 13743 Query 279504 CTGGAAGGATTTCCTAACGCA--TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCG 279561 ||||| || || || || || | || | | |||||||| || ||||||||||||| Sbjct 13744 CTGGAGGGCTTCCC--ACCCAAGGATCAGCTGCGTACAGTGTACGTCGAGCACGACATCG 13801 Query 279562 ACTCCTC 279568 | |||| Sbjct 13802 ATGCCTC 13808 Score = 89.7 bits (98), Expect = 1e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 280686 GACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAA 280745 || || |||||| || ||||| ||||| || || || ||||| |||||||||||||| Sbjct 16870 GAGCCTGAGTTTGGCACACACTCACGCATGCGTGGCCTGTCTGGTGGCCAGAAGGTCAAG 16929 Query 280746 CTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACC 280805 | || | | || ||| ||||| | |||| ||| | | || | || ||||||||| Sbjct 16930 GTGGTGCTGGCGGCTGCTATGTGGAACAACCCACACATCTTGGTCTTGGATGAGCCTACC 16989 Query 280806 AACTATCTGGACCGCGAGAGCCTGGGCGCTCT 280837 ||||| |||||| | ||| |||||||| || Sbjct 16990 AACTACCTGGACAGGGAGTCTCTGGGCGCGCT 17021 >seq370 Length=151298 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| ||||||||| ||||||||||||| || |||| ||||||| |||||||||||| Sbjct 97922 AGCCCGGATAGCTCAGTTGGTAGAGCGCTAGGCTTTTAACCTAGTGGCCGTGGGTTCGAG 97863 Query 142563 CCCCACATCGGGCA 142576 |||||| ||||||| Sbjct 97862 CCCCACTTCGGGCA 97849 >seq82 Length=431385 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||| ||||||||||||| || |||| ||||||| ||||||||||||| Sbjct 407739 GCCCGGATAGCTCAGTTGGTAGAGCGCTAGGCTTTTAACCTAGTGGCCGTGGGTTCGAGC 407680 Query 142564 CCCACATCGGGCA 142576 ||||| ||||||| Sbjct 407679 CCCACTTCGGGCA 407667 >seq67 Length=277217 Score = 98.7 bits (108), Expect = 2e-15 Identities = 271/410 (66%), Gaps = 4/410 (1%) Strand=Plus/Minus Query 251526 CATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTC 251585 ||| || |||| |||||||| ||| || | | || ||||| || | |||||| | Sbjct 72884 CATGACGCCTGCTCGTTGATAGTCACCAACTCTCCTCTCAAAGAAGTTGGTCTTGCCTTG 72825 Query 251586 CAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCC 251645 |||||||| | |||||| |||| |||||||| |||||||| | ||||| || || Sbjct 72824 TAGAGAGATCATCTCCATCCAGTCAAAGGGGTTGCTGGCATTGAAGAGCTTGTCATACCC 72765 Query 251646 AAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTT 251705 | |||| || | ||||||||||||| | | |||||| |||||| || | || Sbjct 72764 CAAAGCTATCAACAGGCGGTCTGCCACATATCTGATGTACTGTGACATCAGCTCTGCATT 72705 Query 251706 CATGCCAATCATACGACA-AGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTG 251764 ||| |||| || |||| | | |||||||| ||| || || || |||| Sbjct 72704 CATTCCAACCA-GTGACACACTGAGCGCCTCACAACAGAACTCATTCTCCAGCCTCACTG 72646 Query 251765 CCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACA 251824 | || |||| || || | || || | || ||| |||| | ||||| ||||| Sbjct 72645 CATCGCCCACTATAGCATGTACAGTCTCCTGTGATAGCCTGTTTTGCAGCTGATTGTACA 72586 Query 251825 G-GAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGA 251883 | ||| | |||| | | |||| || || || | ||||| ||||| ||| | Sbjct 72585 GCAAGCATG-CAAAGTCTGTATGCAAGCCTTCATCCCTGCTGATCAACTCATTGCTGAAT 72527 Query 251884 CCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAA 251933 || || ||||||| || || ||| | ||||||||||| | ||| || Sbjct 72526 GTGAGACCTGGCATCAATCCTCGCTTCTTAAGCCAGAAGATGGAGCAGAA 72477 >seq373 Length=114044 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||| ||||||||||||| || |||| ||||||| ||||||||||| | Sbjct 8821 GCCCGGATAGCTCAGTTGGTAGAGCGCTAGGCTTTTAACCTAGTGGCCGTGGGTTCGAAC 8762 Query 142564 CCCACATCGGGCA 142576 ||||| ||||||| Sbjct 8761 CCCACTTCGGGCA 8749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027827884479357