Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq33 120 3e-22 seq264 114 1e-20 seq47 82.4 6e-11 >seq33 Length=490745 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | ||| | || ||||| || ||||||||||| || Sbjct 196172 ATGCCACCACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCT 196113 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||| ||||| || || ||||| |||| | ||||| ||||| ||| Sbjct 196112 GCCAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGA 196053 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| ||| | | |||| |||||| | || || Sbjct 196052 GGAATACCCTCCTTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCC 195993 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| || | || ||||| |||||||| || ||||| || |||||| || Sbjct 195992 ACTTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCATGCCT 195939 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| || ||| || ||| ||||| || || ||| Sbjct 197503 GTGGACTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCCTCAAGCTGCTTGCCA 197444 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| ||||| ||||||||||| || ||||| |||||| || Sbjct 197443 GCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 197384 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || |||| || | || ||||| ||||| || Sbjct 197383 ACATTGTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTCTTGCCAGTCAGGGTC 197324 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 197323 TTGACAAAGATCTGCATGCCT 197303 >seq264 Length=364395 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | ||| || | || | || ||||| || ||||||||||| || | Sbjct 32665 CCACCACGCAGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 32606 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| || ||| || || ||||| ||||| |||| |||||||| ||||| ||||| Sbjct 32605 AGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 32546 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || ||||| |||||| || | | |||| |||||| | || ||||| Sbjct 32545 ATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACC 32486 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| || | || ||||| |||| || || ||||| || |||||| Sbjct 32485 TCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATG 32438 >seq47 Length=350483 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 || ||||| || | ||||| || ||||| || ||||||||||| || || ||| | Sbjct 106369 AGCCTCAACACAAGATGTAAGGTTGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTCCTG 106428 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || | || || ||||| ||||||| ||||| || || || |||||||||||| Sbjct 106429 CCATCCTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCAGGTGGAATGCCTTCT 106488 Query 114285 TTGTC 114289 ||||| Sbjct 106489 TTGTC 106493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420130933497324