Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq386 134 3e-26 seq80 89.7 1e-12 >seq386 Length=203426 Score = 134 bits (148), Expect = 3e-26 Identities = 121/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||||||||||||| || || || | | ||||||||| |||||||| |||||||| Sbjct 96872 GCCAGGTTGCAGACAGCTGATTCTTCAGGGCTGGTGTACTCCACAATCTCAGTGCAGAGA 96813 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || |||||||||||||||||||||| || |||||||||||| ||||||| ||||||| Sbjct 96812 TTGCTGCACTTGATGGTGCCCAGGTTTTGCTGATTGGACTTGCGGTTGCAGCTGTCCTTG 96753 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 || |||||| | || || ||||| | ||| Sbjct 96752 TACAGCATGTATGGGTTGCCAGTCTCAACCTG 96721 >seq80 Length=281555 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 42758 CATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 |||||||||| | ||| || | || |||| || ||||||||||| ||||| ||||| Sbjct 177642 CATCTTCTGGTTGAAGAAGCGAGGGTTCATGCATGGTCTCACCTTCTCCAACGAGCTCAT 177701 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCG 42866 |||||| || |||||||| || | |||||||| ||||| || | |||| Sbjct 177702 CAGCAGAGATGAGGGGCTCCACACAGACTTTGCATGCCTGCTCTACTCG 177750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944331208529520