Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq264 105 5e-18 seq47 91.5 1e-13 seq33 87.8 1e-12 >seq264 Length=364395 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||||||||| ||| ||||||||| |||||||| || ||| Sbjct 31793 CCACCACGCAGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 31734 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || ||||| |||||||| ||||| ||||| |||||||| || || Sbjct 31733 AAGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 31674 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||| || Sbjct 31673 ATGCCCTCCTTGTCCTGAATCTT 31651 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||| ||| || ||||| ||| ||||||||||||||||| || ||| Sbjct 32665 CCACCACGCAGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 32606 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || |||| || ||||| ||||| ||||| |||||||| || || Sbjct 32605 AGAGTG-CGTCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 32547 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||| || Sbjct 32546 GATGCCCTCCTTGTCCTGAATCTT 32523 >seq47 Length=350483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/132 (78%), Gaps = 6/132 (5%) Strand=Plus/Plus Query 33907 CTCAGCCGCAGCACCAGATG-AAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTG 33965 || |||| || ||| ||||| ||| || | ||||||||||||||||| |||||||| | Sbjct 106366 CTGAGCCTCAACACAAGATGTAAGGTTGAT-TCCTTCTGAATGTTGTAGTCTGCCAA-AG 106423 Query 33966 TC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACG 34023 || || | || ||||| |||||||| ||||| || |||||||||||||| || | | Sbjct 106424 TCCTGC-CATCCTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCAGGTGGAATG 106482 Query 34024 CTCTCTTTGTCC 34035 | ||||||||| Sbjct 106483 CCTTCTTTGTCC 106494 >seq33 Length=490745 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||||||||| || ||| ||||||||||||||||| |||||| Sbjct 196169 CCACCACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCC 196110 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | || || | |||||||| ||||| |||| |||||||| || Sbjct 196109 AAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTC 196057 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| |||| ||||| || || ||| |||||||||||||||||| || || Sbjct 195941 CCTCCTCTCAGACGCAACACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCA 195882 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || | || || | |||||||| ||||| ||||| |||||||| || Sbjct 195881 AGAGTG-CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 195829 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 33898 AAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCT 33957 || || || | ||| || || ||||| || || ||| ||||||||| ||||||||||| Sbjct 197536 AAGCCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCA 197477 Query 33958 GCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 ||||| || | || || | |||||||| ||||| ||||| |||||||| || Sbjct 197476 GCCAAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGA 197417 Query 34018 GGCACGCTCTCTTTGTCCATAATTTT 34043 || | || ||| |||||| ||| || Sbjct 197416 GGAATGCCCTCCTTGTCCTGAATCTT 197391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397059123862954