Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq264 100 7e-16 seq33 89.7 1e-12 >seq264 Length=364395 Score = 100 bits (110), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || ||||||| ||| || || ||||| || |||| Sbjct 31797 CATG-CCACCACGCAGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGT 31739 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || | ||||| || || || || || || || || |||||||||||||| || | Sbjct 31738 CAGCCAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAG 31679 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || ||||| || || | || || || || || | || || | Sbjct 31678 GAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACT 31619 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || | ||||| ||||| ||||||| |||||||| || || ||||| Sbjct 31618 CAACCTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31567 Score = 95.1 bits (104), Expect = 3e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | || || |||| ||| ||| || || || || ||||| || Sbjct 32665 CCACCACGCAGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 32606 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| || || | ||||| || || |||||||||||||| || | ||| Sbjct 32605 AGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 32546 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | || || || || || | || || || || Sbjct 32545 ATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACC 32486 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || |||| |||||||| || || ||||| Sbjct 32485 TCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 >seq33 Length=490745 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || || | ||| || || ||||| || || || || Sbjct 197533 CCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 197474 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | || || || || |||||||||||||| || | || Sbjct 197473 AAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 197414 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | || || || || || | || || || || Sbjct 197413 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCACC 197354 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||||| |||||||| || |||||||| Sbjct 197353 TCCAGTGTGATTGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 197307 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || ||||| | ||| ||| || || || || |||| Sbjct 196173 CATG-CCACCACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGT 196115 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || | || || || || || | || || || || ||||||| ||||| || | Sbjct 196114 CTGCCAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAG 196055 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || ||||| || || | ||| || || || || | || || | Sbjct 196054 GAGGAATACCCTCCTTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACT 195995 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| | ||||| ||||| || |||||||||||||| || || ||||| Sbjct 195994 CCACTTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179644167604006