Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq33 125 7e-24 seq264 113 5e-20 seq386 100 3e-16 seq47 87.8 2e-12 >seq33 Length=490745 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || ||||||||||| ||||| | || || | || Sbjct 196154 AGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTACGGCCATCC 196095 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| ||| | || | |||||||||||| |||||||| || || || || Sbjct 196094 TCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCC 196035 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || || ||| || | || || | |||||||| | ||| | |||| Sbjct 196034 TGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACTTCCAAAGTGATGGTC 195975 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||| || || || |||||||| Sbjct 195974 TTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | ||| || || || | || || || || || ||||||||||| || Sbjct 197533 CCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 197474 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || |||||||||||||| ||| | || || ||||||||||| |||||| Sbjct 197473 AAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 197414 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| || | || || | ||||| Sbjct 197413 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCACC 197354 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| || || || || || ||||| Sbjct 197353 TCCAGTGTGATTGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 197307 >seq264 Length=364395 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| || || || || || |||||||| || || | |||||| | || Sbjct 31778 AGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCC 31719 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||||||| ||| | || || ||||||||||| ||||| || || || || || Sbjct 31718 TCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 31659 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | || || || | ||| | |||| Sbjct 31658 TGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAACCTCCAAAGTGATGGTC 31599 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || || || |||||||| Sbjct 31598 TTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31567 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || |||| || ||||| || ||||||||||| || || | ||||| | || || Sbjct 32648 CACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGTCCATCCTC 32589 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| ||||| ||| | || || ||||||||||| ||||| || || || || || || Sbjct 32588 CAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 32529 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| || | || || | || || || | ||| | |||||| Sbjct 32528 AATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTT 32469 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| || || || || |||||||| Sbjct 32468 GCCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || | ||| | || || || || || |||||||| || || Sbjct 31229 ACCACCACGCAGACGCAGGACCAAATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGC 31170 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| || |||||||||||||| | ||||| ||||||||||| ||||| Sbjct 31169 AAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGG 31110 Query 64336 AATTCCT 64342 ||| ||| Sbjct 31109 AATACCT 31103 >seq386 Length=203426 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || |||| |||||| || || |||||||| || |||| | |||||| || | ||| Sbjct 96875 GATGCCAGGTTGCAGACAGCTGATTCTTCAGGGCTGGTGTACTCCACAATCTCAGTGCAG 96816 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 | ||| ||||| |||||||||||||||| |||||| || ||| |||||| ||| Sbjct 96815 AGATTGCTGCACTTGATGGTGCCCAGGTTTTGCTGATTGGACTTGCGGTTGCAGCTGTCC 96756 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTG 154741 ||||||| ||||| ||| |||| || || || || Sbjct 96755 TTGTACAGCATGTATGGGTTGCCAGTCTCAACCTG 96721 >seq47 Length=350483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||| | || ||||| || ||||||||||| ||||| | || | | || || Sbjct 106377 CACAAGATGTAAGGTTGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTCCTGCCATCCTC 106436 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | ||||||||| ||| | ||||| |||||||| || || ||||| |||||||| || || Sbjct 106437 CAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCCTG 106496 Query 64354 T 64354 | Sbjct 106497 T 106497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499640571755880