Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq33 120 3e-22 seq264 114 1e-20 seq386 109 5e-19 >seq33 Length=490745 Score = 120 bits (132), Expect = 3e-22 Identities = 169/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | ||| | | | || ||||| |||||||||||||| Sbjct 196170 GCCACCACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGC 196111 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| ||||| || || || || | | |||| | ||||| ||||| ||||| Sbjct 196110 CAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGG 196051 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| || ||||| ||| | || | ||| | |||| | | |||||| | |||||| Sbjct 196050 AATACCCTCCTTGTCC-TGAATCTTGGATTTGACATTGT-CAATGGTGTCTGATGACTCC 195993 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || || | || | || || ||||||||||| || ||||| || |||||| || Sbjct 195992 ACTTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCATGCCT 195939 Score = 113 bits (124), Expect = 4e-20 Identities = 168/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 |||| || |||| ||| | ||| | || | | | |||||||| || |||||||| || Sbjct 197535 AGCCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAG 197476 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 || ||| || ||||| || || || || | | |||| |||||||| ||||| |||| Sbjct 197475 CCAAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAG 197416 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTC 138563 | || || || ||||| ||| | || | || | |||| | | |||||| | ||||| Sbjct 197415 GAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGT-CAATGGTGTCTGATGACTC 197358 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||| | || | || || |||||||| || || ||||| ||||||||| || Sbjct 197357 CACCTCCAGTGTGATTGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATGCCT 197303 >seq264 Length=364395 Score = 114 bits (126), Expect = 1e-20 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 |||||| || |||| |||||| || | || | | | || ||||| |||||||||||||| Sbjct 32669 GCAGCCACCACGCAGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTC 32610 Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 || ||| || ||||| || ||||| || | | |||| |||||||| ||||| || Sbjct 32609 AGCCAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 32550 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGAC 138561 ||| || || || ||||| ||| | || | || |||| || | |||||| | ||| Sbjct 32549 AGGGATGCCCTCCTTGTC-CTGAATCTTAGACTTGACATTG-TCAATGGTGTCTGAAGAC 32492 Query 138562 TCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || ||||| | || | || || ||||||| || || ||||| || |||||| Sbjct 32491 TCGACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATG 32438 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | ||| | | | |||||||| || ||||||||||| Sbjct 31794 GCCACCACGCAGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 31735 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| | || || || | | |||| |||||||| ||||| ||||| Sbjct 31734 CAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 31675 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| | || | || |||| || | |||||| | ||||| Sbjct 31674 GATGCCCTCCTTGTC-CTGAATCTTGGACTTGACATTG-TCGATGGTGTCTGAAGACTCA 31617 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| | || | || || || |||| || || ||||| || |||||| Sbjct 31616 ACCTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCATG 31566 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || ||||| | | |||||||| || |||||||||||| Sbjct 31228 CCACCACGCAGACGCAGGACCAAATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCA 31169 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || || |||| |||| |||||||| ||||| ||||| Sbjct 31168 AGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGA 31109 Query 138508 ATACCT 138513 |||||| Sbjct 31108 ATACCT 31103 >seq386 Length=203426 Score = 109 bits (120), Expect = 5e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTC 153655 |||||| || ||||| || ||||| || | ||||| | | | |||||| ||| ||||| Sbjct 96882 GGCAATGGATGCCAGGTTGCAGACAGCTGATTCTTCAGGGCTGGTGTACTCCACAATCTC 96823 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 | |||||| |||||||| || ||| ||||| |||||||||||| ||||| ||||| Sbjct 96822 AGTGCAGAGATTGCTGCACTTGATGGTGCCCAGGTTTTGCTGATTGGACTTGCGGTTGCA 96763 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGC 153758 ||| ||| | |||||||| || ||| ||||| || ||| Sbjct 96762 GCTGTCCTTGTACAGCATGTATGGGTTGCCAGTCTCAACCTGC 96720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258200379440