Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq26 803 0.0 seq7 547 8e-151 seq17 87.8 2e-12 >seq26 Length=15232 Score = 803 bits (890), Expect = 0.0 Identities = 776/994 (78%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 7537 AGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACC 7596 ||| | |||||| |||||||||||||| ||||| |||||||| || ||||| || || Sbjct 2220 AGCTAAGTCAAGTGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATACCTAGGTT 2161 Query 7597 AGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGA 7656 ||||||||||| | ||| ||||| ||||| | |||||||||||| || | | || Sbjct 2160 AGCACGGTTGATAATGTCAGCCCATGTGTTAATTACACGACCTTGAGAGTCTACAACTGA 2101 Query 7657 CTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAA 7716 ||||| |||||||||||||| ||||| |||||||| || | ||| | |||||| || Sbjct 2100 TTGGTTAAAGTTGAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAAAGCAGTAAA 2041 Query 7717 CCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAA 7776 |||||| || || ||||||||||| || | ||||||||| | ||||| ||||||||||| Sbjct 2040 CCAGATCCCTACTACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGAGTTGTTGAA 1981 Query 7777 CGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGT 7836 |||||||||||||| |||| ||| |||||||| ||||| |||||||| |||||||| || Sbjct 1980 AGAAGCGTATTGGAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAATGTTGTAAGT 1921 Query 7837 CTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACG 7896 ||||||||||||||||| || ||||| | ||| || | |||||| |||||||| Sbjct 1920 TTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGTTGTTTCACG 1861 Query 7897 AACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGAC 7956 | | || || ||||| | ||||||||||| ||| ||| |||||||||||||| || Sbjct 1860 GATTAATGATGAAGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACCACCAAATAC 1801 Query 7957 ACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGAC 8016 ||| || || || | ||||||||| |||||||| | |||||||||||| |||||||| || Sbjct 1800 ACCTGCAACACCTAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATAC 1741 Query 8017 AAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTG 8076 || ||| |||| || ||||| ||||| || | |||||| ||||| ||||| ||||| Sbjct 1740 AATCATAAAGTTAAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAAAGACCCTTG 1681 Query 8077 ACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTAC 8136 ||||| ||| |||| | ||| ||||||| || || |||||||| |||||||| ||||| Sbjct 1680 ACCGATAGGGTAGATAATGAACACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTAC 1621 Query 8137 ACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGC 8196 | ||||| || |||||||||| |||| ||||||| ||||| ||||| |||||||| Sbjct 1620 AGCAATCCAAGGGCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCCCATGTAGCA 1561 Query 8197 ATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCA 8256 | | | ||| | | |||||| | | ||| | |||| |||||||||||||||| | ||| Sbjct 1560 ACATACACCTAAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGTTGTATAACCA 1501 Query 8257 CTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGA 8316 |||||| | |||||||||||||||||| || |||||||| | |||||| || || |||| Sbjct 1500 CTCATCTAAAGAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTGCATTTGAAGT 1441 Query 8317 AGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTC 8376 ||||||||||||||||||||| |||||||| || |||| || ||||||| || || || Sbjct 1440 AGGAACAACAGCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAGACACTGGCTC 1381 Query 8377 ACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAACA-AATAG 8435 ||| || ||||| ||||||||||||||||| || || || || | || ||||| | | | Sbjct 1380 ACGAATACCGTCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAAT-AAACACAGTTG 1322 Query 8436 CAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGT 8495 |||| | || ||||| ||||| | ||||| |||||||| | || | ||| || | Sbjct 1321 TTGCAGTTAAAAGAGTAGGGATCATTAAAACACCAAACCAACCAATGTAGATACGGTTTT 1262 Query 8496 TGGTGGAGGTTACCCAGTTACAGAATTGTTCCCA 8529 || || |||||||| | ||| || || |||| Sbjct 1261 CAGTTGAAGTTACCCACTCACAAAAGCGTGCCCA 1228 >seq7 Length=22195 Score = 547 bits (606), Expect = 8e-151 Identities = 735/1020 (72%), Gaps = 2/1020 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| ||||| || ||||| ||||||| ||||||||||| ||||| Sbjct 5123 AGAGCGTTTCCACGTGGTAATACCTCCTCAGGGAATACAATTTTTTCATGTGGCTGATCT 5064 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || || ||||| || || || || ||| Sbjct 5063 TGAGCAGCCATCCATGCACGAATACCTTCGTTTAAAAGAATGTTTTTTGTGTAAAAAGTC 5004 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| || ||||| | || ||||| || || || || ||||||| || Sbjct 5003 TCAAATTCAGGATCTTCTGCTGCACGAATTTCTTGAGATACGAAATCGTAAGCTCGTAGA 4944 Query 6443 TTAAGTGCAAGACCAATAATACCAA-TGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 || | ||| | ||| | || ||||| ||| | |||| | ||| | || || ||||| Sbjct 4943 TTTAATGCTAAACCTACAACACCAAGTGC-ACTCATCCATAAACCAGTTACTGGCACAAA 4885 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 | |||||| || || ||||| || || || || || | ||||||||| |||||||| Sbjct 4884 TAACATAAAAAAGTGAAGCCATCGTTTGTTTGAAAAAGCTACACCAAAGATTTGAGACCA 4825 Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621 |||||||||||| || || | || || || || ||| |||| || || | ||| || Sbjct 4824 GAAACGATTAGCTGTCACGAAAGAGTACGTTTCTTCTGCTTGAGTTGGGTTAAATGCACG 4765 Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681 |||||| |||| |||||||||||||| | ||| || || ||||| ||||||||||| Sbjct 4764 GAAAGTGTTTGCACCATCACCATCTTCAAAAAGAGTGTTTTCAACAGTTGCACCGTGAAT 4705 Query 6682 AGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAG 6741 ||||| ||||| || ||||||| | ||| ||||| |||||||| || || ||||| | Sbjct 4704 CGCACAAAGCAAAGCAGCACCTAATACACCAGCTACTCCCATCATGTGGAAAGGGTTTAA 4645 Query 6742 CGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801 |||||||||||||| || || | || || | ||| || || || | |||| |||||| Sbjct 4644 AGTCCAGTTGTGGAATCCTTGGAAAAAAAGAATGAATCGAAAGATTGAAGCAATACCAAA 4585 Query 6802 CGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAA 6861 || ||||| ||||||| ||||| || | || || || | ||| ||||| ||||| Sbjct 4584 ACTAGGAGCAAAAAACCAACCAGACTGACCTAACGGGTAAATTAAAAAAACAGAAACAAA 4525 Query 6862 GACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTGC 6921 |||||||| || | |||||||| || |||||||| ||||||| | ||| ||| || Sbjct 4524 AACAGCAATAGGTGCTGAAAACGCAATAGCATTGTAAGGACGAAGTCTTACTGAACGAGC 4465 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 || ||||| || || | ||| ||||| || | ||||| ||||| || || || ||||| Sbjct 4464 AATTTCAAATTGGCGTAACATAAAACCAATTAAAGCAAAAGCTCCATGAAGAGCTACAAA 4405 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 | ||| || || || | ||| | ||| || ||||| ||||||||||| ||||| Sbjct 4404 TGCCCAAAGCCCGCCTAATTGAAACCAACGAGTAAAATCAGATTGAGCTTCTGGTCCCCA 4345 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 |||| | || ||||| || | | || || |||||||| || |||||||| | ||| Sbjct 4344 AAGAAACAATAAAGAATGACCCATACTGTTTGCTGGAGTTGAAACTGCAGCAGTTAAGAA 4285 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 |||||| || || || | || || | |||||||| ||||| || || ||||| Sbjct 4284 ATTACAACCTTCTAGGAAACTAGTTGCTAAACCGTGAGTATACCAAGAAGTTACAAAAGT 4225 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 | || || | ||| || || | || || || || ||||| || || | | |||||| Sbjct 4224 AATCCCAGTTAACCATCCACCTAAAGCAAGATATGCTGTAGGAAAGAGTAATAAACCTGA 4165 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAACCACCC 7281 |||||| |||||||| || | || || | ||| ||||| | | ||||||||| || Sbjct 4164 CCAACCTACAAAAACAAAACGGTCGCGGCGTACCCAATCATCTACTGTATCAAACCAACC 4105 >seq17 Length=65237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 8098 TACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACC 8157 |||||||| || || |||||||| ||| |||| | ||| ||||| | ||||||||| Sbjct 34054 TACAGCAGTAGCAGCTGCAACTGGTGCATAGTAGGGGACAGCAATCCAAGTACGCATACC 34113 Query 8158 TAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 || |||| |||| |||||||| |||||| ||||||| Sbjct 34114 TAAACGGGAAGAGAGTTCCCATTCACGAACCATGTA 34149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622119535268880