Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq33 147 5e-30 seq264 141 2e-28 seq47 100 7e-16 >seq33 Length=490745 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| |||||| ||||||||||| | ||||| Sbjct 197518 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCC 197459 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| |||||||||||||| ||| ||| || || ||| Sbjct 197458 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 197399 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || || | |||||||| || || || |||| ||||| ||| Sbjct 197398 TGAATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTC 197339 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| || || Sbjct 197338 TTGCCAGTCAGGGTCTTGACAAAGATCTG 197310 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || ||||| || || ||||| || | ||||||||| |||||||| Sbjct 196163 CGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTA 196104 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || ||||| | ||||||||||| ||| ||| || Sbjct 196103 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACCC 196044 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| || || || | |||||||| || || || ||||| Sbjct 196043 TCCTTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACTTCCAAA 195984 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || ||||| ||||| Sbjct 195983 GTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTG 195946 Score = 98.7 bits (108), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| |||| ||||||||| |||||||| | ||||| ||||||||||| || Sbjct 196709 GTGGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGGCCATCCTCCAGCTGCTTGCCA 196650 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGA 199519 || ||||| |||||||||||||| ||| Sbjct 196649 GCAAAGATCAGACGCTGCTGGTCAGGA 196623 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| || || ||||| || |||| |||||||||||||| ||| Sbjct 197299 CGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCCAGAGTA 197240 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | ||||| || |||||||| || || ||||| |||||||||||||| ||| Sbjct 197239 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGA 197189 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| |||||| || ||||| || |||||||| |||| ||||||||| || | || Sbjct 195589 CGAAGTCGCAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTA 195530 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||| || || |||||||| || || || || | |||||||||||| || Sbjct 195529 CGTCCGTCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCAGG 195480 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 |||||| || |||||||| || | |||||||||||| | ||| | ||||| || ||||| Sbjct 195918 GTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTGCGGCCATCCTCAAGCTG 195859 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||| || || ||||| |||||||||||||| || Sbjct 195858 CTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 195826 >seq264 Length=364395 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || || |||||||| |||| ||||||||||||||| || Sbjct 31787 CGCAGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTG 31728 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||| || || ||||| |||||||||||||| ||| || || Sbjct 31727 CGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCC 31668 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || |||| |||||||| | || || ||||| Sbjct 31667 TCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAACCTCCAAA 31608 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || ||||| ||||| Sbjct 31607 GTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTG 31570 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| || || || ||||| || | |||||||||||||| ||| | |||||| ||| Sbjct 32647 ACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGTCCATCCTCC 32588 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 ||||| || || || ||||| |||||||||||||| ||| || || || |||||| Sbjct 32587 AGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 32528 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||| || || | |||||||| | || || ||||| ||||| ||||| Sbjct 32527 ATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTG 32468 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | || || ||||| ||||| Sbjct 32467 CCAGTCAAGGTCTTGACAAAGATTTG 32442 Score = 107 bits (118), Expect = 5e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || ||||| |||||||| |||| ||||||||||||||| || | ||||| Sbjct 32422 AGGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGACCATCC 32363 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 ||||||||||| || || ||||| |||||||||||||| ||| Sbjct 32362 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGA 32321 Score = 104 bits (114), Expect = 6e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| | || || || |||||||| |||| ||||||||| || | ||| Sbjct 31222 CGCAGACGCAGGACCAAATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTG 31163 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| |||||||||||||||||||||||||| ||| ||| ||| Sbjct 31162 CGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCT 31103 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || | || |||||||| || | |||||||||||| | ||| | ||||| Sbjct 31550 AGGACCAGATGCAATGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTACGACCATCC 31491 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| || || ||||| | |||||||||||| || Sbjct 31490 TCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGG 31450 >seq47 Length=350483 Score = 100 bits (110), Expect = 7e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || |||| ||||| || | || || ||||| || | ||||||||| ||||||||||| Sbjct 106369 AGCCTCAACACAAGATGTAAGGTTGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTCCTG 106428 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| |||||| || || |||||||| |||||||| || || ||| |||||| Sbjct 106429 CCATCCTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCAGGTGGAATGCCTTCT 106488 Query 199532 CGCTCCTG 199539 ||||| Sbjct 106489 TTGTCCTG 106496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178911373960359