Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq264 120 3e-22 seq33 120 3e-22 >seq264 Length=364395 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||||||| | || |||||| ||||| |||||||| | Sbjct 31795 TGCCACCACGCAGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 31736 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| | || || | ||||||||| || || |||| ||||||||||| | | Sbjct 31735 CCAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAG 31676 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||||| ||||| | | | ||||| || || | Sbjct 31675 GGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAA 31616 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| |||| || || |||||||||||||| Sbjct 31615 CCTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31567 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | || ||||| || || |||||||| | |||||||| | Sbjct 32654 ACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGTCC 32595 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| ||||| || || |||| ||||||||||| | || | || |||||| Sbjct 32594 ATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTT 32535 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||| ||||| | | | ||||| || || || |||| ||||| Sbjct 32534 GTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGAT 32475 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| |||| || || |||||||||||||| Sbjct 32474 GGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 Score = 104 bits (114), Expect = 3e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| ||||| ||| |||||| ||||| |||||||||| |||||||| | Sbjct 31217 ACGCAGGACCAAATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACC 31158 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| |||||||||||||||||||| || | ||||||||||| Sbjct 31157 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTC 31116 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||||||||| |||||| || || |||||||| | ||||| || | || ||| Sbjct 31547 ACCAGATGCAATGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTACGACCATCCTCG 31488 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||||||||||| || || ||||| ||||||||||| Sbjct 31487 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTC 31453 >seq33 Length=490745 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||||||| | || ||||| || || |||||||| | Sbjct 196171 TGCCACCACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTG 196112 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||| || | || || ||||||||||| || || ||||| ||||||||||| | | Sbjct 196111 CCAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAG 196052 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||||| ||||| |||| | | | ||||| || |||| Sbjct 196051 GAATACCCTCCTTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCA 195992 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| || || |||||||||||||| Sbjct 195991 CTTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | | |||||| | || || ||||||||||| || || Sbjct 197498 CTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 197439 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | || |||||||||| ||||| ||||| | Sbjct 197438 GATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATT 197379 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| |||| ||||| || ||||| ||||| || || || Sbjct 197378 GTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTCTTGCCAGTCAGGGTCTTGAC 197319 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 197318 AAAGATCTGCAT 197307 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | ||||||||||| || | ||| |||||| || || |||||||| | Sbjct 195943 TGCCTCCTCTCAGACGCAACACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAG 195884 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||||| | || || ||||||||||| || || |||| ||||||||||| Sbjct 195883 CAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 195829 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||||| ||||||||| |||||| ||||| |||||||| | Sbjct 196741 TGCCTCCACGCAGACGCAGCACCAAATGCAATGTGGACTCCTTCTGGATGTTGTAGTCTG 196682 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 | |||||| | || || ||||||||||| || || |||| ||||||||||| Sbjct 196681 CCAAAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 196627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||||| | || |||||| ||||| |||||||||| || || || || Sbjct 195583 CGCAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTACGTCCG 195524 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| || || ||||| ||||||||||| Sbjct 195523 TCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTC 195483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565233616670040