Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq264 100 3e-16 seq33 100 3e-16 >seq264 Length=364395 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || ||||| | ||||| ||||| ||||| | ||| ||||| ||||| || |||| ||| Sbjct 31104 GGTATTCCTCCTGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGC 31163 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || ||||||||||||||| ||||| | || ||||||||||| |||||| || | Sbjct 31164 ACTCTTGCCGACTACAACATCCAGAAGGAGTCCACACTGCATTTGGTCCTGCGTCTGCGT 31223 Query 38466 GGCGG 38470 || || Sbjct 31224 GGTGG 31228 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| |||||||| | || || ||| | | Sbjct 31567 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTTGAGTCTTCA 31626 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | ||||| ||||| || || | ||||| Sbjct 31627 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 31686 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||| |||| || | |||||| | ||||||||| Sbjct 31687 CAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGGCTGACTACAAC 31746 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || || ||| ||||||||||| || | || ||| Sbjct 31747 ATCCAGAAGGAGTCCACCCTTCATCTGGTGCTGCGTCTGCGTGGTGGC 31794 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| |||||||| | || |||||| | | Sbjct 32439 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCTTCA 32498 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | ||||| ||||| || || | ||||| Sbjct 32499 GACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 32558 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || |||||||||||||| || | ||||| || ||||||||| Sbjct 32559 CAGCGTCTGATCTTTGCTGGCAAACAGCTGGAGGATGGACGCACTCTGGCTGACTACAAC 32618 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 || || |||||| | || || || | ||| ||||| || | || ||| || Sbjct 32619 ATTCAGAAGGAATCCACCCTTCACCTTGTGTTGCGTCTGCGTGGTGGCTGC 32669 >seq33 Length=490745 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| |||||||| | || || ||| | | Sbjct 195943 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTTTGGAAGTGGAGTCATCA 196002 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| || || | ||||| ||||| ||||| | ||||| Sbjct 196003 GACACCATTGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 196062 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 |||||| | || | || ||||| ||||| || || | || || | ||||||||| Sbjct 196063 CAGCGGTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGGCAGACTACAAC 196122 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || |||||| | || || ||| ||||||||||| || | || ||| Sbjct 196123 ATTCAGAAGGAATCCACCCTCCATCTGGTGCTGCGTCTGCGTGGTGGC 196170 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| || || | || ||||| ||||| || || | ||| Sbjct 195817 GGCATTCCCCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGC 195876 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || ||||||||||| || ||||| | || || || |||||| ||||| ||||| Sbjct 195877 ACTCTTGCTGACTACAACATTCAGAAGGAGTCCACACTCCACTTGGTGTTGCGTCTGAGA 195936 Query 38466 GGCGGC 38471 || ||| Sbjct 195937 GGAGGC 195942 Score = 82.4 bits (90), Expect = 8e-11 Identities = 92/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| || ||||| ||||| || || | || ||||| |||||||| || | ||||| Sbjct 196619 TCCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTT 196678 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | |||||||||||||| ||||| | || ||||||||||||||||| || | || | Sbjct 196679 TGGCAGACTACAACATCCAGAAGGAGTCCACATTGCATTTGGTGCTGCGTCTGCGTGGAG 196738 Query 38470 GC 38471 || Sbjct 196739 GC 196740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168567287680