Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq13 241 2e-58 seq152 134 2e-26 seq48 109 7e-19 >seq13 Length=690608 Score = 241 bits (266), Expect = 2e-58 Identities = 532/797 (67%), Gaps = 12/797 (2%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || ||||| || |||||||| ||||| || | ||| || || || || || || Sbjct 513793 GCACCATATGCTACTGCCTCATCTGGGTTGATAGATTTGCATAGCTCCTTGCCATTGAAG 513734 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | ||| || || | || || || || || || ||||| || | || | Sbjct 513733 AAGTCCTGAAGCATCTGCTGCACCTTAGGAATACGGGTGGAGCCACCAACTAGGACAACC 513674 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| || | || || || || | ||||| | || |||||||| ||||| Sbjct 513673 TCATGGACAGTGCTCTTGTCCATTTTGGCATCTCGCAAGCACTTCTCGACAGGCTCCATG 513614 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 || || | ||||| |||||| || ||||| || | || | ||||||| | ||| Sbjct 513613 CACTTTCTGAACAGGTCCATGTTCAACTCCTCGAATCTGGCCCTGGTAATGCTGCTGTAG 513554 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || || || ||| | | || || || || |||| || ||||| | || || | Sbjct 513553 AAGTCGACACCTTCGAAGAGAGAGTCGATCTCGATGGACGTCTGTGCGCTGGAGGACAGA 513494 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| || | ||| || | | || || ||||| ||||| || | Sbjct 513493 GTACGCTTTGCACGCTCGCATGACGTCCGGAGCCTTCGCAGAGCACGAGGGTTGCCAGTG 513434 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| | || || |||||||| | || ||| || | || || ||| Sbjct 513433 ATGTCCTTCTTGTTCTTGCGCTTAAACTCCTGAGTGAAATGGTTGACCAGCCTGTTGTCG 513374 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || |||||||||||||| || || || || || | ||||| || || || || | Sbjct 513373 AAGTCCTCACCACCCAAGTGAGTGTCACCAGCTGTGGACTTGACCTCGAAAATGCCCTCC 513314 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || ||| | | |||||| ||||| || || |||||||| |||||||| || || || || Sbjct 513313 TCGATGGTCAGCAACGACACATCGAAGGTGCCACCACCAAGGTCAAAGATCAGAACATTG 513254 Query 7580 GTATCGTCGTC---TTTGT---TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 ||| || | | ||| ||||||||||||| || ||||| || || || ||||| Sbjct 513253 CGCTCGCCGACGGCTGTGTCCTTCTTATCGAGACCATAAGCGATGGCTGCAGCAGTTGGC 513194 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| | || | || |||||| || ||| | || || || || || Sbjct 513193 TCGTTGATGATACGCATGCACTCCAAGCCAGCGATGACTGCTGAGTCCTTTGTGGCCTGA 513134 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT---- 7749 || ||||||||||| ||||| || || || || || || || | |||| | ||| Sbjct 513133 CGCTGCGAATCGTTGAAGTAAGCTGGCACTGTAACAACTGCACGCTTGACCTCCTTGTCA 513074 Query 7750 --ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCT 7807 || | | || | || | || ||||| ||| ||||||||| || | ||| Sbjct 513073 GCTCCCAAAAACTGCTGTGCTGTCTCCTTCATCTTGACAAGAACCATGGAGCTGACCTCC 513014 Query 7808 TCAGCCGCAAACTGTTT 7824 || || | ||||||||| Sbjct 513013 TCTGCTGAAAACTGTTT 512997 >seq152 Length=86443 Score = 134 bits (148), Expect = 2e-26 Identities = 143/188 (76%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 ||||| | ||||| || |||||||| || || |||||||| |||||||| || Sbjct 78393 AACTTGCGGCCGATCAGTCGCTTTGCGTCGAACACTGTGTTGCGAGGGTTCATAGCGACC 78452 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || |||||||| || || || | | | || || ||||||| ||| Sbjct 78453 TGGTTCTTAGCTGCATCCCCGATCAGGCGCTCTGTGTCT---GTGAAACCGACGTAAGAT 78509 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || || || || |||||||| || || || ||||| ||||||||||||||||||||| Sbjct 78510 GGTGTTGTGCGGTTGCCTTGGTCATTGGCGATGATTTCAACGCGGTCGTTTTGCCAGACG 78569 Query 8108 CCGACGCA 8115 || ||||| Sbjct 78570 CCCACGCA 78577 Score = 131 bits (144), Expect = 2e-25 Identities = 218/311 (70%), Gaps = 8/311 (3%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || || |||||||||||||| || || || || || | ||||| |||||||| || Sbjct 77670 ATCAAAGTCCTCACCACCCAAGTGGGTGTCTCCAGCTGTGGACTTGACCTCAAAGATGCC 77729 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 |||||| | |||| ||||| || ||||||||||||| |||||| || || || Sbjct 77730 AGAGTCAATGGTCAACAGACTGACATCGAAGGTACCACCACCCAAGTCAAAGATCAGCAC 77789 Query 7576 GTTCGTATCGTC----GTCTTTG--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 || ||| | | || | ||||| || | |||||| || || || || || || Sbjct 77790 ATTGCGCTCGCCAACTGACTCAGACTTCTTGTCCAAACCGTATGCAATGGCAGCTGCAGT 77849 Query 7630 TGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 || || || || ||||| || || || ||||| ||||| | | | || || || || | Sbjct 77850 CGGCTCGTTGATGATACGCAACAC-GTCAAGGCCTGCAATGGCTCCTGCGTCCTTGGTGG 77908 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCT 7748 |||| || || || || || |||||||| || || || || || ||| | |||| | || Sbjct 77909 CTTGACGCTGAGAGTCATTGAAGTAGGCGGGCACTGTGACAACTGCGCGCTTGACGTCCT 77968 Query 7749 TACCGAGATAC 7759 | || ||| || Sbjct 77969 TGCCCAGAAAC 77979 >seq48 Length=276317 Score = 109 bits (120), Expect = 7e-19 Identities = 199/288 (69%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || |||||||| |||||||| || || || || || | ||| ||||| | || Sbjct 122206 TCAAAGTCTTCACCGCCCAAGTGGGTGTCTCCAGCTGTGGACACGACCTCAAACACGCCG 122265 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | | | || |||||||| ||||||||||||| |||||| | | | | Sbjct 122266 TTGTCAATGGTCAGGATGGACACATCAAAGGTACCACCACCCAAGTCAAACACCAAGATG 122325 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | | ||| | ||||| || |||||||| || || || || || ||||| ||| Sbjct 122326 T---TGTGCTCGCCACCCTTCTTGTCAAGACCGTAGGCAATGGCTGCTGCTGTTGGCTCA 122382 Query 7637 TTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || |||||||| || | | || |||||||| | || ||||| || |||||||| Sbjct 122383 TTGATAATACGCTCCACTG-TGAGACCAGCAATGACACCAGCGTCTTTGGTGGCTTGTCG 122441 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGAC 7743 || | || || ||||| || ||||| || || || || | | |||| Sbjct 122442 CTGAGCGTCATTGAAGTATGCTGGGACGGTGACAACAGCATGCTTGAC 122489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635127425188680