Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq350 114 2e-20 seq264 87.8 2e-12 >seq350 Length=149706 Score = 114 bits (126), Expect = 2e-20 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| || ||||| || || || || |||| | || |||| | || || || || Sbjct 132456 TCAAAACGTCCTGGTCGCAGCAGAGCAGCATCCAAGACATCAGGTCTGTTGGTGGCAGCC 132397 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 | |||| | || || | | ||||| |||||||| ||||||| |||||||| || Sbjct 132396 AGCACAATGACTCCAGTGTTGCCCTCAAAGCCATCCATTTCTGTCAGCAGCTGGTTGATG 132337 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 16065 || || || || |||||||| || || ||| ||||||| || || | ||||| | Sbjct 132336 GTCTGCTCACGCTCATCATT-GCCACCAC-CCATGCCAGCACCACGCTGTCTGCCCACAG 132279 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGG 16096 ||||||||||||||||||||||||||||||| Sbjct 132278 CATCAATCTCATCAATGAAGACGATGCATGG 132248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 16116 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 16175 ||||| ||||||| ||||| ||| |||||||| || |||| ||||||||| | || | Sbjct 131677 TCAAACAGATCCCTGACACGGGAGGCACCCACACCCACGAACAGCTCCACAAACTCTGAG 131618 Query 16176 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 || | ||| || |||||| || || || || |||||||| ||| || || ||| Sbjct 131617 GCTGCACAGCTGAAGAAGGGCACGCCAGCCTCGCCAGCAATGGCCTTGGCCAGCAGGGTC 131558 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || || || ||||| ||| | ||||| ||| ||||||||||| || Sbjct 131557 TTGCCTGTGCCTGGGGGGCCCACCAGGAGACACCCTTTGGGAATCTTGGCACC 131505 >seq264 Length=364395 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| || || || | | ||| || | || || || ||| | | || || || || Sbjct 215009 TCAAAACGGCCAGGCCTCATGAGGGCATTGTCCAGAATGTCAGCTCTGTTGGTAGCAGCA 215068 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 ||||||| || || || | | ||||| |||||||||||||||| |||||||| | Sbjct 215069 ATGACAATGATTCCAGTGTTGCCCTCAAAGCCATCCATCTCTGTCAGCAGCTGGTTCAGT 215128 Query 16008 GTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAG---CACTGCGTTGCTTTCCCA 16062 || || || || ||||| || | | | | | |||||| ||| | | | |||| Sbjct 215129 GTCTGCTCACGCTCATCGTTGCCACCGCC--AACACCAGTTCCACGGGATCG---ACCCA 215183 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC 16105 | |||||||||||||||| ||||| ||||||||| ||| || Sbjct 215184 CAGCATCAATCTCATCAACAAAGACAATGCATGGTGCATTCTC 215226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620737146967440