Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq26 722 0.0 seq7 556 2e-153 >seq26 Length=15232 Score = 722 bits (800), Expect = 0.0 Identities = 752/981 (77%), Gaps = 4/981 (0%) Strand=Plus/Plus Query 179747 CTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCT 179806 ||| || ||||||||||| || || | ||||| |||| | |||||||| || ||| | Sbjct 1236 CTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTT 1295 Query 179807 GATGATTCCAACTCTGTTGGCAGCAACTATCTG-CTTCATCGTCGCCTTCATCGCTGCTC 179865 ||||| || ||||| || | ||||| | ||| || || | || || | || |||| Sbjct 1296 AATGATCCCTACTCTTTTAACTGCAAC-AACTGTGTTTATTATTGCATTTGTAGCAGCTC 1354 Query 179866 CCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 179925 | |||||||||||||| || || ||||| || || ||||||| || |||| || |||| Sbjct 1355 CTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACA 1414 Query 179926 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 179985 |||| ||||||||||| ||||||||| |||| || ||||||||| | |||||||| || | Sbjct 1415 ACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAA 1474 Query 179986 TCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCG 180045 |||||||||| || || | || |||||| | || ||||||||||||| |||| | || | Sbjct 1475 TCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTG 1534 Query 180046 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATC 180105 | | |||||| | | || | | | ||||||||| ||||| ||||| ||||||| | Sbjct 1535 TATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCC 1594 Query 180106 GCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 180164 | || ||||||||||| ||||| ||| ||||| || ||||| ||||| || || || || Sbjct 1595 GTTTAGGTATGCGCCCTTGGAT-TGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 1653 Query 180165 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGC 180224 ||||| ||| | |||| ||| |||||||||| || || ||||| |||||| | || Sbjct 1654 GCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGT 1713 Query 180225 ATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCAC 180284 || || || || || |||| ||| |||| |||||||| |||||||||||| | |||||| Sbjct 1714 ATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCAC 1773 Query 180285 CCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCAC 180344 || ||||||||| | || || |||||||| || || ||||| || ||||| || ||||| Sbjct 1774 CCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCAT 1833 Query 180345 GGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTAC 180404 |||||| | || || || ||| | | |||||||| ||||| | | || ||| | Sbjct 1834 GGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAA 1893 Query 180405 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTC 180464 |||||||| || |||||||||||||| || |||||||| |||||||| || || ||||| Sbjct 1894 GGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTT 1953 Query 180465 GGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTG 180524 || ||| |||| ||||| || || || ||||||||||| ||||| | ||||||||| | Sbjct 1954 GGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTA 2013 Query 180525 GCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 180584 || |||||||| || || || |||||||| ||||| | || || || |||||||| Sbjct 2014 GCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTT 2073 Query 180585 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAAC 180644 ||||| |||||||||||||| ||||| || | | || |||||||||||| | ||| Sbjct 2074 AACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAAC 2133 Query 180645 ACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 180704 || ||||| ||| | ||||||| ||| || |||||||| || |||||||| ||||| Sbjct 2134 ACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAAC 2193 Query 180705 GCTCACAACTTCCCACTTGAC 180725 ||||||||||||||||||||| Sbjct 2194 GCTCACAACTTCCCACTTGAC 2214 >seq7 Length=22195 Score = 556 bits (616), Expect = 2e-153 Identities = 733/1016 (72%), Gaps = 0/1016 (0%) Strand=Plus/Plus Query 181421 TGGTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 181480 |||||||| | | ||||| ||| | |||||||| ||||| ||||| || ||||| Sbjct 4108 TGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGGTCA 4167 Query 181481 GGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACT 181540 || || | || ||||| || || |||||||| | || || ||| | ||||| | |||| Sbjct 4168 GGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATTACT 4227 Query 181541 TTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTC 181600 ||||| || || ||||| || ||||| || || || | ||| || ||| ||||||| Sbjct 4228 TTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAATTTC 4287 Query 181601 CTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 181660 | || || || || ||||| || || || ||||||||||||| | | | |||||| Sbjct 4288 TTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCTTTGG 4347 Query 181661 GGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTT 181720 || || |||||||| ||||| || ||| | ||| | || || || ||||| ||| Sbjct 4348 GGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGCATTT 4407 Query 181721 GTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCT 181780 || || || || ||||| || ||| | || ||||||||| | | ||||||||| ||||| Sbjct 4408 GTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAATTGCT 4467 Query 181781 CGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTC 181840 ||| | | || | || || |||||||| ||||| ||||| | ||||||||||| || Sbjct 4468 CGTTCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGTTTTT 4527 Query 181841 GTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTC 181900 || ||||| ||| | || || || | || || || ||||||| ||||| || ||||| Sbjct 4528 GTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAGTTTT 4587 Query 181901 GGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTC 181960 ||| | || | || || || ||| |||| || |||| || || || || ||||| | Sbjct 4588 GGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGACTTTA 4647 Query 181961 AATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATT 182020 || || ||||| |||||||| || |||||| | | |||| || || || | ||| ||| Sbjct 4648 AACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGCGATT 4707 Query 182021 CACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAA 182080 ||||||| || || || || ||||| | | |||| ||||| ||||| |||||| Sbjct 4708 CACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACACTTTCCGT 4767 Query 182081 GCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGG 182140 ||||| | ||||||||| ||||||||| || || | || ||||| || || |||||| Sbjct 4768 GCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGTTTCTGG 4827 Query 182141 TCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTT 182200 ||||| ||||| ||| | || ||| || || | ||| | || || |||||| | ||| Sbjct 4828 TCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATGTTATTT 4887 Query 182201 GTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTT 182260 || || || | ||| | |||| ||| | | ||| || | ||| | || | || || Sbjct 4888 GTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCATTAAATCTA 4947 Query 182261 CGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACG 182320 || ||||| || || ||||| |||||||| | ||| ||||||| || || || ||||| Sbjct 4948 CGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATTTGAGACT 5007 Query 182321 TTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGAT 182380 || |||||||| |||||||| || || |||||| | ||||||||| | || | ||| Sbjct 5008 TTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGCTCAAGAT 5067 Query 182381 CAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || |||||||| || |||| ||||||||||| |||||||| | || ||||| || Sbjct 5068 CAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGCTCT 5123 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 141253 ATTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAA 141312 ||||| |||||||||| || ||||| ||||||||||||| ||||||||||||||| Sbjct 19690 ATTCCCTAGTAGCTCAGTGGTAGAGCGCTCGACTGTTAATCGATTGGTCGTAGGTTCAAG 19749 Query 141313 TCCTACCTGGGGAG 141326 |||||||||||||| Sbjct 19750 TCCTACCTGGGGAG 19763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610391634517080