Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq26 666 0.0 seq7 365 5e-96 >seq26 Length=15232 Score = 666 bits (738), Expect = 0.0 Identities = 747/990 (75%), Gaps = 8/990 (1%) Strand=Plus/Plus Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461 ||||| ||||||||||| ||||| | ||| | ||||| ||||||||||||||||| || Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 169462 ATGATTCCATGCT-TACTCACAGCAGCAGCA-TGTTTCATCGTTGCATTCATTGCAGCAC 169519 ||||| || | || | | || ||| || | ||||| || ||||||| | ||||| | Sbjct 1297 ATGATCCC-TACTCTTTTAACTGCAACAACTGTGTTT-ATTATTGCATTTGTAGCAGCTC 1354 Query 169520 CTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACA 169579 ||||||| || |||||||| || | || ||||| | ||||| | ||||| || |||| Sbjct 1355 CTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACA 1414 Query 169580 ACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAA 169639 |||| ||||||||||| |||||||| | ||||| || || || ||||||||||||||| Sbjct 1415 ACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAA 1474 Query 169640 TCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAA 169699 ||||||||||||| || | ||||| ||||| || || ||||||||||| || || || Sbjct 1475 TCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTG 1534 Query 169700 TCTTCCAC--TTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATA 169757 | | |||| || |||| |||| | || |||||||| | | ||||| || || | Sbjct 1535 TATGCCACTTTTTCTTAGGTGTATGT-TGC-TACATGGGGCGTGAATGGGAGCTTTCTTT 1592 Query 169758 CAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATT 169817 | | ||||| ||||| |||||||| ||| || |||||||||||||| | ||||| Sbjct 1593 CCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTAC 1652 Query 169818 CGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGG 169877 ||||| ||| | | ||||| | ||||| || || || ||| |||||||| |||| Sbjct 1653 TGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGG 1712 Query 169878 TATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCA 169937 ||||||||||||||| ||||||||| | || |||||||| ||||| ||||| ||||||| Sbjct 1713 TATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCA 1772 Query 169938 TCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCA 169997 |||||||||||| ||| || ||||| | || || || ||| | ||||| || ||||| Sbjct 1773 CCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCA 1832 Query 169998 TGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTA 170057 ||||||| | || |||||||| ||||| | |||||||| ||| | | || ||| | Sbjct 1833 TGGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGA 1892 Query 170058 TGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTT 170117 ||||| || ||||| |||||||||||||| |||||||| || || || ||||||||||| Sbjct 1893 AGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTT 1952 Query 170118 TGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCT 170177 ||| ||| | || ||||| || ||||| |||||||||||| | | ||||||||||| | Sbjct 1953 TGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTT 2012 Query 170178 AGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATT 170237 ||| | | || || ||| | | ||||| || || | ||||| | || |||||||| Sbjct 2013 AGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATT 2072 Query 170238 CAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCC 170297 ||| | || |||||||||||||||||||||||||| || || | || | | Sbjct 2073 TAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAA 2132 Query 170298 AACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAA 170357 ||||||| ||| || | ||| | || ||| | |||||||| || ||||| ||| | || Sbjct 2133 CACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAA 2192 Query 170358 TGCACACAACTTCCCACTAGACCTAGCATC 170387 || |||||||||||||| ||| |||| || Sbjct 2193 CGCTCACAACTTCCCACTTGACTTAGCTTC 2222 >seq7 Length=22195 Score = 365 bits (404), Expect = 5e-96 Identities = 706/1044 (68%), Gaps = 21/1044 (2%) Strand=Plus/Plus Query 170523 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGG 170582 |||||||||||| | || || ||| || | || |||||||| || |||| ||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 170583 TCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACT 170642 || ||| | ||||| | ||| ||||| || | | ||||| ||||| |||| | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 170643 ACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAAC 170702 || || || || || |||||||| || ||| | || | | || || || ||||| Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAAT 4284 Query 170703 TTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 170762 ||| |||| || |||||||| || || | || ||||||||| | | |||| ||| Sbjct 4285 TTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCTT 4344 Query 170763 TGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAAC 170822 |||||||| ||||| ||| | ||| ||||||||| ||| | || || | ||| Sbjct 4345 TGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGCA 4404 Query 170823 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATC 170882 |||||||| | ||||||| |||| | || ||||| ||| | | |||||||| || Sbjct 4405 TTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAATT 4464 Query 170883 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 170942 || | ||| | | | |||||||| || | || || || || ||| || || Sbjct 4465 GCTCGTTCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGTT 4524 Query 170943 TTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCA 171002 || | | ||| | || || || |||||||| ||||||| || || || Sbjct 4525 TTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAGT 4584 Query 171003 TTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 171062 || ||| | || |||| ||||| | || | || | ||||| ||||||||| || Sbjct 4585 TTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGACT 4644 Query 171063 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCC 171122 || || || || ||||||||||| || || || || |||||| || || | ||||| Sbjct 4645 TTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGCG 4704 Query 171123 ATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAAT 171182 ||||| |||||||| || | ||||| | | |||||| | | || || Sbjct 4705 ATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGAT------GGTGATGGTG----- 4753 Query 171183 AAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGT 171242 |||| || |||||||| ||| | || || || | ||||||||| ||| | Sbjct 4754 ------CAAAC----ACTTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCT 4803 Query 171243 ATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGA 171302 | | ||||| || | |||||||| || || |||||| | ||||| || |||||| || Sbjct 4804 TTCGTGACAGCTAATCGTTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGA 4863 Query 171303 TTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGT 171362 | | ||||| ||||||| || || || || | ||| | |||| | | ||| Sbjct 4864 TGGCTTCACTTTTTTATGTTATTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGT 4923 Query 171363 ATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCA 171422 | |||||| ||||| | || || |||| |||||||| ||||||||||| || | ||| Sbjct 4924 GTTGTAGGTTTAGCATTAAATCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCA 4983 Query 171423 GCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATG 171482 |||||||| || || || |||||||| ||||| || || || ||| | || |||||||| Sbjct 4984 GCAGAAGATCCTGAATTTGAGACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATT 5043 Query 171483 AGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTG 171542 | ||||||||| | | || || |||||||| || | |||||||| || || || Sbjct 5044 CGTGCATGGATGGCTGCTCAAGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTA 5103 Query 171543 TTACCAAGAGGTAACGCACTTTAA 171566 |||||| | || ||||| |||||| Sbjct 5104 TTACCACGTGGAAACGCTCTTTAA 5127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579207898411680