Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq26 774 0.0 seq7 580 1e-160 >seq26 Length=15232 Score = 774 bits (858), Expect = 0.0 Identities = 760/978 (78%), Gaps = 2/978 (0%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 || || || ||||| ||||| || | ||||| |||| |||||||||| || ||| | Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 163845 ATGATCCCTACGCTGCTTGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163903 ||||||||||| || | | |||| || |||| || || | || || || || ||||| Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAA-CAACTGTGTTTATTATTGCATTTGTAGCAGCTCC 1355 Query 163904 CCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAA 163963 |||||||||||||| ||||||||||| || || | ||||| || |||| || ||||| Sbjct 1356 TCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAA 1415 Query 163964 CATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCAT 164023 ||| ||||||||||| |||||||| | || |||||||||||| | ||||||||||| || Sbjct 1416 CATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAAT 1475 Query 164024 TTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGT 164083 |||||||| || || | ||||| ||| | |||||||||||||||| |||| | || || Sbjct 1476 CTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 1535 Query 164084 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACCG 164143 | |||||| | | ||| | | | |||||||| ||||| ||||| || |||| ||| Sbjct 1536 ATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCCG 1595 Query 164144 TCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGC 164203 | | |||||||| ||||||||| ||| |||||||||||||| |||||||| || | || Sbjct 1596 TTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 1655 Query 164204 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCAT 164263 || ||| | |||| ||| |||||||||| || || ||||| |||||| | || || Sbjct 1656 TGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTAT 1715 Query 164264 CTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCC 164323 ||| || || || |||| ||| | || |||||||| |||||||||||| | |||||||| Sbjct 1716 CTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 1775 Query 164324 CTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164383 ||||| ||| | || ||||| || |||||||| |||||||| ||| ||| ||||| || Sbjct 1776 TTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATGG 1835 Query 164384 TTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGG 164443 ||| | || ||||| || | | |||||||| || || | | || ||| | || Sbjct 1836 TTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAGG 1895 Query 164444 TTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGG 164503 |||||| || ||||||||||||||||| |||||||||||||| || |||||||||||||| Sbjct 1896 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTGG 1955 Query 164504 TCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 164563 ||| |||| |||||||||||||| ||||||||||| ||||| || ||||||||| | || Sbjct 1956 GCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAGC 2015 Query 164564 TGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAA 164623 ||||||||| || || || |||||||| || || | ||| | || || |||||||| || Sbjct 2016 TGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTAA 2075 Query 164624 CCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164683 ||| |||||||||||||| ||||| || | | || ||| |||||||| | ||||| Sbjct 2076 CCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAACAC 2135 Query 164684 TTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGC 164743 ||||| ||| || ||||||| ||| || |||||||| || |||||||| |||||||| Sbjct 2136 ATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACGC 2195 Query 164744 TCACAACTTCCCTCTGGA 164761 |||||||||||| || || Sbjct 2196 TCACAACTTCCCACTTGA 2213 >seq7 Length=22195 Score = 580 bits (642), Expect = 1e-160 Identities = 747/1025 (73%), Gaps = 12/1025 (1%) Strand=Plus/Plus Query 165188 GGGTGGTTCGATGTCCTCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGG 165247 || ||||| ||| | ||||| ||| | || || ||||| |||||||| |||||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 165248 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACT 165307 || || | | || ||||| || || ||||||||| | || || ||| | ||||||| | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 165308 ACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAA----GTTCCTATCTGGAGGGTGC 165363 ||||| | || ||||||||||||||| || |||| |||||| | ||| || Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTA---GAAGGTTGT 4281 Query 165364 AAACTTTCTT-ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGC 165422 || |||||| ||||| |||||||| ||||||||| || ||||||||||||| | || Sbjct 4282 AA--TTTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGT 4339 Query 165423 TTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCT 165482 |||| ||||| || || |||||| ||||| | ||| | ||| | || || || | Sbjct 4340 TTCTTTGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTT 4399 Query 165483 GGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTG 165542 |||| ||||| || || || || ||||| ||| |||||||||| ||| | || || |||| Sbjct 4400 GGGCATTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTG 4459 Query 165543 AATTAGCACGTCTCA-TCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATC 165601 || | || ||| ||| | | | ||||| ||||||||||||||||| || | ||||| Sbjct 4460 AAATTGCTCGT-TCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATT 4518 Query 165602 GCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCT 165661 |||||||||||| || ||| | || ||||| | ||||| || |||||||||| ||| Sbjct 4519 GCTGTTTTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCT 4578 Query 165662 CCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAAC 165721 || ||| || | || ||||||| | ||| |||| || | ||||||||||| ||| Sbjct 4579 CCTAGTTTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAAC 4638 Query 165722 TGGACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTT 165781 ||||| || || || || || |||||||| || || ||| | | |||| ||| |||||| Sbjct 4639 TGGACTTTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTT 4698 Query 165782 TCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAAT 165841 | ||| || || |||| || || || || ||||| | | |||||||||| | |||||| Sbjct 4699 TGTGCGATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAAC 4758 Query 165842 ACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAAC 165901 |||||| |||||| || | ||||||| |||||||| ||||| | || || || || Sbjct 4759 ACTTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAAT 4818 Query 165902 CGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTT 165961 |||||||||||||| ||||| ||| | || ||| || || | ||| | || || ||| Sbjct 4819 CGTTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTT 4878 Query 165962 ATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCT 166021 ||| | ||||| || || | ||| | |||| ||| | | ||| || | ||| | || Sbjct 4879 ATGTTATTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCA 4938 Query 166022 CTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAG 166081 | || || || ||||| || || ||||| ||||| || | ||||||||||| || || Sbjct 4939 TTAAATCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAA 4998 Query 166082 TTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCA 166141 ||||| || || ||||| ||||||||||| || || |||||| ||||||| ||| |||| Sbjct 4999 TTTGAGACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCT 5058 Query 166142 CCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAAC 166201 | ||||| || ||||| || |||| |||||||| || || | || | || ||| Sbjct 5059 GCTCAAGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAAC 5118 Query 166202 GCGCT 166206 || || Sbjct 5119 GCTCT 5123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556920087023880