Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq26 659 0.0 seq7 376 3e-99 >seq26 Length=15232 Score = 659 bits (730), Expect = 0.0 Identities = 741/988 (75%), Gaps = 4/988 (0%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 || || || |||||||| |||||| | ||| | || || |||||||||| ||||| | Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| | | | || ||| || | || || ||||||| | ||||| ||| Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAACAACTGTGTTTATTATTGCATTTGTAGCAGCTCCT 1356 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 ||||| || |||||||| || | || ||||| | ||||| | || || || |||||| Sbjct 1357 CCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAAC 1416 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || ||||||||||| |||||||| | ||||| ||||| ||| | ||||||||||| ||| Sbjct 1417 ATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAATC 1476 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 ||||||||||| | ||||||| ||||| ||||| ||||||||||| || || || | Sbjct 1477 TGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 1536 Query 172120 TTCCAC--TTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACA 172177 | |||| || |||| |||| | || |||||||| | | ||||| || || | | Sbjct 1537 TGCCACTTTTTCTTAGGTGTATGT-TGC-TACATGGGGCGTGAATGGGAGCTTTCTTTCC 1594 Query 172178 GATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTG 172237 | ||||||||| | || ||||| |||||| || || ||||| || |||| || || Sbjct 1595 GTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 1654 Query 172238 CTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 172297 |||||||| || | || || ||||||| || || || ||| |||||||| |||||| Sbjct 1655 CTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTA 1714 Query 172298 TCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATC 172357 |||||||||| || ||||||||| | || |||||||| ||||| ||||| ||||||| | Sbjct 1715 TCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACC 1774 Query 172358 CTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACG 172417 ||||||||||| ||| || ||||| | ||||| || ||| | ||||| || ||||| | Sbjct 1775 CTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATG 1834 Query 172418 GTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACG 172477 |||| ||||| || || || ||||| | || |||||||| |||| ||| | | Sbjct 1835 GTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAG 1894 Query 172478 GATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTG 172537 | ||||| ||||| |||||||||||||| |||||||| || || || ||||||||||||| Sbjct 1895 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTG 1954 Query 172538 GTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAG 172597 | ||| | || ||||| || |||||||||||||||||| | | | ||||||||| ||| Sbjct 1955 GGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAG 2014 Query 172598 CAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 172657 | | | || || ||| | | ||||| || || | ||||| | || |||||||| | Sbjct 2015 CTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTA 2074 Query 172658 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTA 172717 |||| |||||||||||||| ||||||||||||||||| || | ||| | || | Sbjct 2075 ACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAACA 2134 Query 172718 CATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATG 172777 |||||| |||| || | ||| | || |||||||||||||| || ||||| ||| | || | Sbjct 2135 CATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACG 2194 Query 172778 CACACAACTTCCCATTAGACCTTGCTTC 172805 | |||||||||||| | ||| | ||||| Sbjct 2195 CTCACAACTTCCCACTTGACTTAGCTTC 2222 >seq7 Length=22195 Score = 376 bits (416), Expect = 3e-99 Identities = 712/1046 (68%), Gaps = 25/1046 (2%) Strand=Plus/Plus Query 172945 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGG 173004 |||||||||||| | || || ||| || | || ||||| || || | || ||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 173005 TCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACT 173064 || ||| | ||||| | ||| || || ||| || | ||||| ||||| || | | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 173065 ACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAAC 173124 || || || || || |||||||| || ||| | ||| || | || ||||| || Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAAT 4284 Query 173125 TTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 173184 || ||||| || ||||| || || || | || ||||||||| | | |||| ||| Sbjct 4285 TTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCTT 4344 Query 173185 TGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAAC 173244 |||||||| ||||| ||| | || |||||||| ||| | || || || ||| Sbjct 4345 TGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGCA 4404 Query 173245 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATC 173304 |||||||| | ||||||| |||| | || ||||| ||| | || || ||||| || Sbjct 4405 TTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAATT 4464 Query 173305 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 173364 || | ||| | | | |||||||| || | || || || || ||| || || Sbjct 4465 GCTCGTTCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGTT 4524 Query 173365 TTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCA 173424 || | | |||||||| ||||| |||| ||| ||||||| || || ||| Sbjct 4525 TTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAGT 4584 Query 173425 TTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 173484 || ||| | || |||||||||| | || | || | ||||| ||||||||| || Sbjct 4585 TTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGACT 4644 Query 173485 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCC 173544 || || || || ||||||||||| || || || || |||||| || || || ||||| Sbjct 4645 TTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGCG 4704 Query 173545 ATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGT 173604 ||||| |||||||| || | ||||| | | |||||| | ||| ||| Sbjct 4705 ATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGA------------TGGTGATGGT 4752 Query 173605 AAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGT 173664 ||| | |||||| | |||||| | || || || | ||||||||| || | Sbjct 4753 G-----CAAAC----ACTTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCT 4803 Query 173665 ATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGA 173724 | | ||||| || | |||||||| || || |||||| | || |||||||||||| || Sbjct 4804 TTCGTGACAGCTAATCGTTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGA 4863 Query 173725 TTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCA-TCCA-TAG 173782 | | ||||| | ||||| || || || || | ||| | |||| | | | || | | Sbjct 4864 TGGCTTCACTTTTTTATGTTATTTGTGCCAGTAACTGGTTTATGGA--TGAGTGCACTTG 4921 Query 173783 GTATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAG 173842 || | |||||| | ||| | || || |||| ||||| || ||||||||||| || | | Sbjct 4922 GTGTTGTAGGTTTAGCATTAAATCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTG 4981 Query 173843 CAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTA 173902 ||||||||||||| || || |||||||| ||||| || || || ||| | || ||||||| Sbjct 4982 CAGCAGAAGATCCTGAATTTGAGACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTA 5041 Query 173903 TGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAG 173962 | | ||||||||| | || |||||| |||||||| || | ||||| || || || | Sbjct 5042 TTCGTGCATGGATGGCTGCTCAAGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGG 5101 Query 173963 TGTTACCAAGAGGTAACGCACTTTAA 173988 | |||||| | || ||||| |||||| Sbjct 5102 TATTACCACGTGGAAACGCTCTTTAA 5127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588046223616720