Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq26 765 0.0 seq7 522 3e-143 seq17 84.2 2e-11 >seq26 Length=15232 Score = 765 bits (848), Expect = 0.0 Identities = 761/980 (78%), Gaps = 4/980 (0%) Strand=Plus/Plus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 || || |||||||||||||| || | ||||| |||| | |||||||| || || | Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 162503 ||||| || ||||| || | |||| || |||| || || | || || || || ||||| Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAA-CAACTGTGTTTATTATTGCATTTGTAGCAGCTCC 1355 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 ||||||||||||||||| || ||||| || || ||||||| || |||| || ||||| Sbjct 1356 TCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAA 1415 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 ||| ||||||||||| |||||||| |||| || ||||||||| | |||||||| || || Sbjct 1416 CATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAAT 1475 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683 ||||||||| || || | ||||||||| | || ||||||||||||| |||| | || || Sbjct 1476 CTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 1535 Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743 || |||||| | | || | | | ||||||||| ||||||||||| || |||| ||| Sbjct 1536 ATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCCG 1595 Query 162744 TCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802 | | |||||||| || ||||| ||| ||||| ||||||||||| |||||||| || | | Sbjct 1596 TTTAGGTATGCGCCCTTGGAT-TGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 1654 Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862 | || ||| | |||| ||| |||||||||| ||||| ||||| |||||||| |||| Sbjct 1655 CTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTA 1714 Query 162863 TCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATC 162922 || ||||| || |||| ||| |||| |||||||| ||||||||||| | ||||| | Sbjct 1715 TCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACC 1774 Query 162923 CCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACG 162982 | ||||||||||| ||||| |||||||| || |||||||| || ||| ||| ||||| | Sbjct 1775 CTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATG 1834 Query 162983 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 163042 |||| || || || || ||| | ||||||| || ||||| | | || ||| | | Sbjct 1835 GTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAG 1894 Query 163043 GTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCG 163102 ||||||| ||||||||||||||||| || |||||||| || || || || |||||||| | Sbjct 1895 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTG 1954 Query 163103 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 163162 | |||||||| |||||||| || || ||||||||||| ||||| || ||||||||| | | Sbjct 1955 GGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAG 2014 Query 163163 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 163222 |||||||||| || || || |||||||| || || | || | ||||| |||||||| | Sbjct 2015 CTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTA 2074 Query 163223 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 163282 |||| |||||||||||||| ||||| || | | || ||| |||||||| | |||| Sbjct 2075 ACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAACA 2134 Query 163283 CCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATG 163342 | ||||| ||| || | |||||||| | |||||||| || |||||||| || || | Sbjct 2135 CATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACG 2194 Query 163343 CTCACAACTTCCCACTTGAC 163362 |||||||||||||||||||| Sbjct 2195 CTCACAACTTCCCACTTGAC 2214 >seq7 Length=22195 Score = 522 bits (578), Expect = 3e-143 Identities = 730/1024 (71%), Gaps = 0/1024 (0%) Strand=Plus/Plus Query 163615 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGG 163674 || ||||||||| | ||||| ||| | ||||| ||||| || ||| | |||||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 163675 TCTGGATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACA 163734 || || ||| |||| |||| || || ||| | || | ||||| ||| | ||||| | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 163735 ACTTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAAT 163794 ||||| || || || ||||| || || || | |||||| | || || ||| |||| Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAAT 4284 Query 163795 TTTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTC 163854 || | || || || || ||||| || || || ||||||||||||| | | |||| Sbjct 4285 TTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCTT 4344 Query 163855 TGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAAT 163914 ||||| || || ||||| ||||| || ||| | ||| | || || || ||| Sbjct 4345 TGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGCA 4404 Query 163915 TTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTT 163974 ||||| || || || ||||| |||||| | |||||||| ||| | || ||||||||| || Sbjct 4405 TTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAATT 4464 Query 163975 GCTCGCCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTC 164034 ||||| | || | | || |||||||| ||||| || || | ||||||||||| Sbjct 4465 GCTCGTTCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGTT 4524 Query 164035 TTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCT 164094 || ||| ||| ||| | || ||||| | ||||| || ||||||| || ||||| | Sbjct 4525 TTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAGT 4584 Query 164095 TTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACT 164154 ||||| | || ||||||| ||||| | | || | |||||||| || ||||||||| Sbjct 4585 TTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGACT 4644 Query 164155 TTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCT 164214 || ||||| ||||| ||||||||||| |||||| || |||| | || ||||| | ||| Sbjct 4645 TTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGCG 4704 Query 164215 ATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTT 164274 |||||||| | || |||||||| || | | ||||||||| || |||||||| || Sbjct 4705 ATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACACTTTC 4764 Query 164275 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 164334 || ||| | | || || | |||||| || || ||| | || || || || || ||| Sbjct 4765 CGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGTTTC 4824 Query 164335 TGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 164394 ||||| || ||||| ||||| || ||||| ||||| || |||||||| ||||| ||||| Sbjct 4825 TGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATGTTA 4884 Query 164395 TTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAAT 164454 |||||||| || | ||| |||||| | |||| || | || | || | ||| Sbjct 4885 TTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCATTAAAT 4944 Query 164455 CTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAG 164514 || || ||||||||||| ||| |||||| ||| | ||||||||||||||||| || ||| Sbjct 4945 CTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATTTGAG 5004 Query 164515 ACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTT 164574 ||||| || || || ||||| | || |||||||| | ||||||||| | || | Sbjct 5005 ACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGCTCAA 5064 Query 164575 GACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTT 164634 || |||||| ||| |||| ||||| || || ||| | || | || || || ||| Sbjct 5065 GATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGCTCTT 5124 Query 164635 TAAT 164638 |||| Sbjct 5125 TAAT 5128 >seq17 Length=65237 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 162711 CTACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-G 162769 |||||||| ||||||||||||||||||| |||| | ||||||||| | ||||| ||| | Sbjct 34150 CTACATGGTTCGTGAATGGGAACTCTCTTCCCGTTTAGGTATGCGTACTTGGAT-TGCTG 34092 Query 162770 TAGCATACTCTGCACCTGTTGCAGCAGC 162797 | | |||| |||||| |||||||| || Sbjct 34091 TCCCCTACTATGCACCAGTTGCAGCTGC 34064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557579281445400