Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq26 621 4e-173 seq7 547 7e-151 seq17 84.2 2e-11 >seq26 Length=15232 Score = 621 bits (688), Expect = 4e-173 Identities = 730/994 (73%), Gaps = 2/994 (0%) Strand=Plus/Plus Query 167079 TGGGAATCCTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTC 167138 |||| | |||||| || ||||| || ||| | |||||| | || | |||||||| Sbjct 1228 TGGGCACGCTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTT 1287 Query 167139 GGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGT 167197 || ||| | ||||||||||| | | | |||| || |||| || || || || || || Sbjct 1288 GGTGTTTTAATGATCCCTACTCTTTTAACTGCAA-CAACTGTGTTTATTATTGCATTTGT 1346 Query 167198 CGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTA 167257 | |||||||||||||||||||| ||||| || || ||||| ||||||| || |||| Sbjct 1347 AGCAGCTCCTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTA 1406 Query 167258 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTT 167317 || |||||||| ||||||||||| ||||||||| |||| ||||| |||||| | ||||| Sbjct 1407 CGGAAACAACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTT 1466 Query 167318 CTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCA 167377 ||| || |||||||||||||| | | || |||||||| ||||| |||||||||| ||| Sbjct 1467 CTACCCAATCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCA 1526 Query 167378 ACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACT 167437 | | || || | |||||| | | || | | | ||| ||||| ||||| ||||| || Sbjct 1527 ATTAGTTGTATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCT 1586 Query 167438 CTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGC 167497 |||| |||| | |||||||| || ||||| ||| || |||||||| ||||| || || Sbjct 1587 TTCTTTCCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGC 1646 Query 167498 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCC 167557 || ||||||| ||| | |||| ||| |||||||||| ||||| ||||| ||||| Sbjct 1647 TGCTACTGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCC 1706 Query 167558 TCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 167617 | |||||||| ||||| || |||| ||| |||| |||||||| |||||||||||| | Sbjct 1707 CTTAGGTATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTT 1766 Query 167618 GATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGC 167677 |||||||| ||||| ||| | || ||||| || ||||| || |||||||| ||| ||| Sbjct 1767 AATGCACCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGC 1826 Query 167678 AATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCA 167737 ||||| ||||| | || || || || | | |||||||| || || | | || Sbjct 1827 TATGCATGGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGC 1886 Query 167738 GAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGG 167797 ||| | |||||||| |||||||| |||||||| || || ||||| || ||||| || || Sbjct 1887 TAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGG 1946 Query 167798 TTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTT 167857 |||||| || || |||| ||||||||||| || ||||||||||| || || | ||||| Sbjct 1947 TTACTTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTT 2006 Query 167858 CTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNN 167917 |||||| || |||||||| || || || ||||||| Sbjct 2007 CTTCTTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTAT 2066 Query 167918 NNNATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGT 167977 ||| ||||| |||||||||||||| ||||| || | | || | ||| || Sbjct 2067 GGCATTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGT 2126 Query 167978 TCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGA 168037 | || ||||| ||| | ||||||||||| || |||||||| || |||||||| Sbjct 2127 AATTAACACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGA 2186 Query 168038 GCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 168071 ||||| |||||||||||||| || ||| | ||| Sbjct 2187 ACGTAACGCTCACAACTTCCCACTTGACTTAGCT 2220 >seq7 Length=22195 Score = 547 bits (606), Expect = 7e-151 Identities = 740/1025 (72%), Gaps = 12/1025 (1%) Strand=Plus/Plus Query 168477 GGGTGGTTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGG 168536 || ||||| ||| | ||||| ||| | || || ||||| |||||||| |||||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 168537 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACT 168596 || || | | || ||||| || || ||||||||| | || || ||| | ||||||| | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 168597 GCTTTCGTCACGAGTTGGTATACTCACGGGTTGGCAA----GTTCCTATCTGGAGGGCGC 168652 |||| || || ||||||||||||||| || |||| |||||| | ||| | Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTA---GAAGGTTGT 4281 Query 168653 AAACTTTCTT-ACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGC 168711 || |||||| ||||| |||||| ||||||||| | ||||||||||||| | || Sbjct 4282 AA--TTTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGT 4339 Query 168712 TTCTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCT 168771 |||| ||||| || || || ||| ||||| | |||| |||| | || || || | Sbjct 4340 TTCTTTGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTT 4399 Query 168772 GGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTG 168831 |||| ||||| || || || || ||||| ||| |||| ||||| ||| | || || |||| Sbjct 4400 GGGCATTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTG 4459 Query 168832 AACTGGCACGTCTCA-TCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATC 168890 || | || ||| ||| | | | ||||| ||||||||||||||||| || | ||||| Sbjct 4460 AAATTGCTCGT-TCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATT 4518 Query 168891 GCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCT 168950 |||||||||||| || ||| | || ||||| | ||||| || |||||||||| ||| Sbjct 4519 GCTGTTTTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCT 4578 Query 168951 CCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAAC 169010 || ||| || | | ||||||| |||||| |||| || | ||||||||||| ||| Sbjct 4579 CCTAGTTTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAAC 4638 Query 169011 TGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTT 169070 ||||| | || || || || |||||||| ||||| ||| | || || | || |||||| Sbjct 4639 TGGACTTTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTT 4698 Query 169071 TCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAAT 169130 | ||| ||||| |||| || || || || ||||| | | |||||||||| ||||| Sbjct 4699 TGTGCGATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAAC 4758 Query 169131 ACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAAC 169190 |||||| |||||| || ||||| | ||| || || || || | || || || || Sbjct 4759 ACTTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAAT 4818 Query 169191 CGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTT 169250 |||||||||||||| ||||||||| | || || || || | ||| | || || ||| Sbjct 4819 CGTTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTT 4878 Query 169251 ATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCT 169310 ||| | ||||| || || | ||| | |||| ||| | | ||| || | ||| | || Sbjct 4879 ATGTTATTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCA 4938 Query 169311 CTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAG 169370 | || || || ||||| || || || || ||||| || | |||||||||||||| || Sbjct 4939 TTAAATCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAA 4998 Query 169371 TTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCA 169430 |||||||| || ||||| || ||||| || || ||||||||| ||||||||||| | || Sbjct 4999 TTTGAGACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCT 5058 Query 169431 CCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAAT 169490 || ||||| || ||||| || |||| ||||||||||| ||| | || || || || Sbjct 5059 GCTCAAGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAAC 5118 Query 169491 GCCCT 169495 || || Sbjct 5119 GCTCT 5123 >seq17 Length=65237 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/166 (72%), Gaps = 5/166 (3%) Strand=Plus/Minus Query 167347 ACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCA 167406 ||||||| || |||| || ||| || |||| | || || | | ||| | | || Sbjct 34216 ACGAGTGATTAGACAACGGCGGTTTTTACCAATTAGTTGTATGTTATTTCTTT-TAGG-- 34160 Query 167407 TCTATGC--CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTG 167464 |||||| ||| |||| |||||| ||||||||||||| |||| | ||||||||| | || Sbjct 34159 TCTATGTTGCTACATGGTTCGTGAATGGGAACTCTCTTCCCGTTTAGGTATGCGTACTTG 34100 Query 167465 GATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTA 167510 ||| ||| | |||| ||| ||||| || || || |||||||| Sbjct 34099 GATTGCTGTCCCCTACTATGCACCAGTTGCAGCTGCTACTGCTGTA 34054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560603255854800