Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq26 776 0.0 seq7 563 1e-155 >seq26 Length=15232 Score = 776 bits (860), Expect = 0.0 Identities = 766/987 (78%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 181785 TGGGAACAATTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTT 181844 |||| || || || |||||||| || || || | || ||| |||| | ||||||||| Sbjct 1228 TGGGCACGCTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTT 1287 Query 181845 GGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGT 181903 ||||| | |||||||| ||||| || | ||||| | |||| || || |||| || || Sbjct 1288 GGTGTTTTAATGATCCCTACTCTTTTAACTGCAACAA-CTGTGTTTATTATTGCATTTGT 1346 Query 181904 AGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTA 181963 |||||| |||||||| || ||||||||||| || || || || ||||||| || |||| Sbjct 1347 AGCAGCTCCTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTA 1406 Query 181964 TGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTT 182023 || |||||||| ||||||||||||||||| || | || || ||||||||| | ||||| Sbjct 1407 CGGAAACAACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTT 1466 Query 182024 CTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 182083 |||||||||||||||||| || || | ||||||||| | || ||||||||||||| ||| Sbjct 1467 CTACCCAATCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCA 1526 Query 182084 ACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCTACATGGGACGTGAGTGGGAACT 182143 | | ||||| | |||||| | | || | | ||||||||| ||||| ||||| || Sbjct 1527 ATTAGTTGTATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCT 1586 Query 182144 TTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGC 182203 ||||| ||| ||||||||||| || ||||| |||||| |||||||| ||||| || || Sbjct 1587 TTCTTTCCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGC 1646 Query 182204 AGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCC 182263 || ||||||| ||| | |||| ||| |||||||||| || || || | ||||| Sbjct 1647 TGCTACTGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCC 1706 Query 182264 CCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCT 182323 | | || |||||||| || || |||| |||| | || |||||||||||||||||||| | Sbjct 1707 CTTAGGTATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTT 1766 Query 182324 TATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGC 182383 ||||| || ||||||||||| ||||| ||||||||||| |||||||| || || ||| Sbjct 1767 AATGCACCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGC 1826 Query 182384 AATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACA 182443 ||||| ||||| || || || || ||| | ||||||| || |||||| | | || Sbjct 1827 TATGCATGGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGC 1886 Query 182444 GAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGG 182503 ||| | |||||||| ||||||||||||||||| || || ||||| ||||| || || || Sbjct 1887 TAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGG 1946 Query 182504 CTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTT 182563 ||||| || |||||||| ||||||||||| || ||||||||||| ||||| || ||||| Sbjct 1947 TTACTTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTT 2006 Query 182564 CTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGAT 182623 |||| | ||||||||||| || || || |||||||| || || | ||| | || || || Sbjct 2007 CTTCTTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTAT 2066 Query 182624 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGT 182683 |||||| ||||| |||||||||||||| ||||| || | | || ||| |||||||| Sbjct 2067 GGCATTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGT 2126 Query 182684 CCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGA 182743 ||||||| ||||| || | | ||||||||| || |||||||| || ||||| || Sbjct 2127 AATTAACACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGA 2186 Query 182744 GCGTAACGCACACAACTTCCCACTAGA 182770 |||||||| |||||||||||||| || Sbjct 2187 ACGTAACGCTCACAACTTCCCACTTGA 2213 >seq7 Length=22195 Score = 563 bits (624), Expect = 1e-155 Identities = 742/1026 (72%), Gaps = 2/1026 (0%) Strand=Plus/Plus Query 183175 GGGTGGTTCGATGTCCTTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGG 183234 || ||||| ||| | ||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 4105 GGTTGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGG 4164 Query 183235 TCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACA 183294 || || | |||| |||| || || |||||||| | || || ||| | ||||| | Sbjct 4165 TCAGGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATT 4224 Query 183295 GCTTTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAAC 183354 ||||||| || ||||||||| || || | || || | || |||||| ||| Sbjct 4225 ACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAA- 4283 Query 183355 TTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACT 183413 ||||||| | || || || || || || || || ||||||||||||| | |||| || Sbjct 4284 TTTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCT 4343 Query 183414 TTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAA 183473 |||||| || || ||||| || ||| || |||| ||| | || || || ||| Sbjct 4344 TTGGGGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGC 4403 Query 183474 TTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACT 183533 ||||| || || || || || |||||| | |||||||| ||| | || || |||||| | Sbjct 4404 ATTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAAT 4463 Query 183534 TGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGT 183593 |||||| | | | | ||||||||||||||||||||||| || | ||||||||||| Sbjct 4464 TGCTCGTTCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGT 4523 Query 183594 TTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAG 183653 |||||| ||| || | || || || | ||||||||| ||||| ||||| ||||| Sbjct 4524 TTTTGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAG 4583 Query 183654 TTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGAC 183713 ||| || | || |||||||| ||||| | | || | || || |||||||||||||| Sbjct 4584 TTTTGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGAC 4643 Query 183714 GTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGC 183773 |||||||| ||||| ||||||||||| |||||| || |||| | || | || |||| Sbjct 4644 TTTAAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGC 4703 Query 183774 TATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATT 183833 || || |||| || || || || || | | ||||||||| || |||||||| || Sbjct 4704 GATTCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACACTTT 4763 Query 183834 CAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTT 183893 | |||||| | | ||||||| |||||| ||||| ||| | || ||||| |||||||| Sbjct 4764 CCGTGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGTTT 4823 Query 183894 CTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTT 183953 |||||| |||||||| || || || ||| || || || ||| | ||||| |||||||| Sbjct 4824 CTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATGTT 4883 Query 183954 GTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAA 184013 ||||| || || | ||| | ||| | | | |||| | | || | || | || Sbjct 4884 ATTTGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCATTAAA 4943 Query 184014 TCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGA 184073 ||| || ||||| ||||| ||| |||||| || | |||||||||||||| |||||||| Sbjct 4944 TCTACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATTTGA 5003 Query 184074 GACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTC 184133 ||| || |||||||| ||||| ||| | || ||||| | ||||||||| | || || Sbjct 5004 GACTTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGCTCA 5063 Query 184134 TGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCT 184193 ||||| |||||||| || || |||| || |||||||||||||| | || || ||||| Sbjct 5064 AGATCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGCTCT 5123 Query 184194 TTGATG 184199 || ||| Sbjct 5124 TTAATG 5129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611690823522600