Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq26 722 0.0 seq7 590 7e-164 seq17 84.2 2e-11 >seq26 Length=15232 Score = 722 bits (800), Expect = 0.0 Identities = 760/992 (77%), Gaps = 16/992 (2%) Strand=Plus/Plus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 ||||| |||||||| ||||| || | |||||| | || | |||||||| |||||| | Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 164824 ATGATCCC--CTGTTTGCTCGCCGCTACAATTTGTTTTATTACTGCATTCATCGCTGCTC 164881 |||||||| || ||| | | || |||| | ||||||| |||||| | || |||| Sbjct 1297 ATGATCCCTACTCTTT--TAACTGCAACAACTGTGTTTATTATTGCATTTGTAGCAGCTC 1354 Query 164882 CCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACA 164941 | ||||||||||| || ||||||||||| || || | ||||| || ||||||| |||| Sbjct 1355 CTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACA 1414 Query 164942 ACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTA 165001 |||| |||||||||||||| ||||| |||| || ||||| || | |||||||| || | Sbjct 1415 ACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAA 1474 Query 165002 TTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTG 165061 | |||||||| || | | ||||| ||||| |||||||||||||||||||| || |||| Sbjct 1475 TCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTG 1534 Query 165062 TCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACC 165121 | | |||||| || | |||||| |||||||||||| ||||| ||||| || |||| || Sbjct 1535 TATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCC 1594 Query 165122 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCG 165181 | | |||||||| ||||||||| ||||| || ||||| || || |||||| | | Sbjct 1595 GTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 1654 Query 165182 CAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTA 165241 | || ||| | |||| ||| ||||||||||| ||| ||| |||||||| | |||| Sbjct 1655 CTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTA 1714 Query 165242 TCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATC 165301 |||| ||||||||||||| |||| | || |||||||| || || ||||| | ||||| | Sbjct 1715 TCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACC 1774 Query 165302 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 165361 | ||||||||| | || ||||| || ||||| ||||| |||||||||||||||||||||| Sbjct 1775 CTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATG 1834 Query 165362 GAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGA-AACAGAGAGTCAG--AACT 165418 | | || ||||| ||| | |||| || |||||||| ||| | || | ||| Sbjct 1835 GTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAAC---CAATCTGCTAACG 1891 Query 165419 ACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACT 165478 | ||||| || || || ||||||||||| || || ||||| || ||||| ||||| |||| Sbjct 1892 AAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACT 1951 Query 165479 TCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCC 165538 | || ||| | |||||||||||||| || |||||||| || ||||| | ||||||||| Sbjct 1952 TTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCT 2011 Query 165539 TCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCAT 165598 | || |||||||| ||||| || |||||||| |||||| | ||| | || ||||||| Sbjct 2012 TAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCAT 2071 Query 165599 TCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTC-AGAAC--AAAATCA 165655 | ||||| |||||||||||||| ||||| || |||| || || || | ||| | Sbjct 2072 TTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTA 2131 Query 165656 TCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGC 165715 | || ||||||||| || | ||||||||| || |||||||| || ||||| || | Sbjct 2132 AC---ACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAAC 2188 Query 165716 GTAACGCTCACAACTTCCCCCTCGACCTCGCT 165747 ||||||||||||||||||| || ||| | ||| Sbjct 2189 GTAACGCTCACAACTTCCCACTTGACTTAGCT 2220 >seq7 Length=22195 Score = 590 bits (654), Expect = 7e-164 Identities = 727/991 (73%), Gaps = 2/991 (0%) Strand=Plus/Plus Query 166188 CGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTT 166247 || || ||||| |||||||| |||||||| || | | || |||| || || |||||| Sbjct 4138 CGCGACCGTTTTGTTTTTGTAGGTTGGTCAGGTTTATTACTCTTTCCTACAGCATATCTT 4197 Query 166248 GCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTC 166307 ||| | || || ||| | ||||||| |||||| || || |||||||||||| || | Sbjct 4198 GCTTTAGGTGGATGGTTAACTGGGATTACTTTTGTAACTTCTTGGTATACTCACGGTTTA 4257 Query 166308 GCAAGCAGTTATCTGGAGGGTGCAAACTTTCTT-ACTGCGGCAGTTTCTACTCCAGCAGA 166366 |||| |||| || || ||| || |||||| ||||| |||||||| ||||||||| | Sbjct 4258 GCAACTAGTTTCCTAGAAGGTTGTAA-TTTCTTAACTGCTGCAGTTTCAACTCCAGCAAA 4316 Query 166367 TGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAG 166426 ||||||||||||| || | |||| ||||| || || |||||| ||||| | Sbjct 4317 CAGTATGGGTCATTCTTTATTGTTTCTTTGGGGACCAGAAGCTCAATCTGATTTTACTCG 4376 Query 166427 GTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAAT 166486 |||| ||| | || ||||||||||| ||||| ||||| || || |||||||| |||| Sbjct 4377 TTGGTTTCAATTAGGCGGGCTTTGGGCATTTGTAGCTCTTCATGGAGCTTTTGCTTTAAT 4436 Query 166487 TGGTTTCATGCTTCGGCAGTTTGAAATCGCTCGTCTAGTAGGTATTCGTCCGTACAATGC 166546 |||||| ||| | || || |||||||| |||||| |||| | ||||||| |||||||| Sbjct 4437 TGGTTTTATGTTACGCCAATTTGAAATTGCTCGTTCAGTAAGACTTCGTCCTTACAATGC 4496 Query 166547 AATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGG 166606 || || ||||| | ||||||||||| || ||| ||| ||| | || ||||| | || Sbjct 4497 TATTGCGTTTTCAGCACCTATTGCTGTTTTTGTTTCTGTTTTTTTAATTTACCCGTTAGG 4556 Query 166607 TCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCT 166666 ||| || |||||||||| ||||| ||| || | | ||||||| |||||| | || Sbjct 4557 TCAGTCTGGTTGGTTTTTTGCTCCTAGTTTTGGTATTGCTTCAATCTTTCGATTCATTCT 4616 Query 166667 TTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGG 166726 ||| | |||||||||||||||||||| | ||||| || || |||||||| ||||| || Sbjct 4617 TTTTTTCCAAGGATTCCACAACTGGACTTTAAACCCTTTCCACATGATGGGAGTAGCTGG 4676 Query 166727 TATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTA 166786 | | | |||| ||| ||||||| ||| || || |||| || || || |||||||| | Sbjct 4677 TGTATTAGGTGCTGCTTTGCTTTGTGCGATTCACGGTGCAACTGTTGAAAACACTCTTTT 4736 Query 166787 TCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAAC 166846 | |||||||||| ||||| |||||| ||||| || | ||||||| |||||||| Sbjct 4737 TGAAGATGGTGATGGTGCAAACACTTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAAC 4796 Query 166847 CTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAA 166906 || || | || ||||| || || | |||||||| ||||| ||| | || ||| || Sbjct 4797 GTACTCTTTCGTGACAGCTAATCGTTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAA 4856 Query 166907 TAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTC 166966 || | ||| | || || |||||| | ||||| || || | ||| | |||| ||| | Sbjct 4857 CAAACGATGGCTTCACTTTTTTATGTTATTTGTGCCAGTAACTGGTTTATGGATGAGTGC 4916 Query 166967 CATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACT 167026 | ||| || | ||| | || | || || || ||||| || || || || |||||| | Sbjct 4917 ACTTGGTGTTGTAGGTTTAGCATTAAATCTACGAGCTTACGATTTCGTATCTCAAGAAAT 4976 Query 167027 AAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGA 167086 | |||||||| |||||||| ||||| || || || || || |||||||| || || || Sbjct 4977 TCGTGCAGCAGAAGATCCTGAATTTGAGACTTTTTACACAAAAAACATTCTTTTAAACGA 5036 Query 167087 GGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGA 167146 ||||| ||| | |||||||| || ||||| || ||||| | | ||||||||||| Sbjct 5037 AGGTATTCGTGCATGGATGGCTGCTCAAGATCAGCCACATGAAAAAATTGTATTCCCTGA 5096 Query 167147 AGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 ||||| | || | || |||||||| ||| Sbjct 5097 GGAGGTATTACCACGTGGAAACGCTCTTTAA 5127 >seq17 Length=65237 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 165035 ACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACA 165094 ||||||| ||| |||||| || ||||| | | ||| | | ||| || |||||||| Sbjct 34204 ACAACGGCGGTTTTTACCAATTAGTTGTATGTTATTTCTTT-TAGGTCTATGTTGCTACA 34146 Query 165095 TGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCAT 165154 ||| |||||| |||||||| |||| ||| | ||||||||| |||||||| || | | Sbjct 34145 TGGTTCGTGAATGGGAACTCTCTTCCCGTTTAGGTATGCGTACTTGGATTGCTGTCCCCT 34086 Query 165155 ATAGCGCACCTGTCGCTGCTGCTGCCGCAGT 165185 | ||||| || || |||||| | || || Sbjct 34085 ACTATGCACCAGTTGCAGCTGCTACTGCTGT 34055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563656030020480