Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq26 684 0.0 >seq26 Length=15232 Score = 684 bits (758), Expect = 0.0 Identities = 741/981 (76%), Gaps = 6/981 (1%) Strand=Plus/Plus Query 169695 TGATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGAT 169754 ||| |||||||| || | ||||| ||||| |||||||||| ||||| || ||||| Sbjct 1242 TGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTAATGAT 1301 Query 169755 CCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGT 169814 ||| ||| ||| | ||| |||| ||||| |||| || | |||||||| ||||| Sbjct 1302 CCCTACTCTTTTAACTGCAACAACTGTGTTTATTATTGCATTTGTAGCAGCTCCTCCTGT 1361 Query 169815 GGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCAT 169874 ||||||||| || || | || || || | ||||| | |||| || |||||||| || Sbjct 1362 GGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAACATTAT 1421 Query 169875 CTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGA 169934 ||||||||| |||||||| ||||||| ||||| ||| | |||||||| || || ||||| Sbjct 1422 CTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAATCTGGGA 1481 Query 169935 AGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCA 169994 |||||| || ||||||||||||| || |||||||||||||| ||||||||| | | ||| Sbjct 1482 AGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTATGCCA 1541 Query 169995 CTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGG 170054 ||| | | || | | | ||||||||| | | ||||| || || | ||||||||| Sbjct 1542 CTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCCGTTTAGG 1601 Query 170055 TATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATT 170114 |||||| |||||||| |||||| || ||||| ||||| |||| || ||||| || Sbjct 1602 TATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTGTT 1661 Query 170115 CTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGG 170174 | | | || ||| ||||||| || ||||| ||||| ||||| ||||||||||||| Sbjct 1662 CATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTATCTCAGG 1721 Query 170175 TACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCA 170234 ||| |||||||| ||| | ||||||||||| ||||||||||| | |||||||| ||||| Sbjct 1722 TACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCTTTCCA 1781 Query 170235 TATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACT 170294 ||| ||| ||||| ||| | || || || | || ||||| || ||||| |||||| | Sbjct 1782 CATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATGGTTCATT 1841 Query 170295 TGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAA 170354 ||||| || || ||||| | || ||||| || ||| | || ||| | || ||||| Sbjct 1842 AGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAGGTTACAA 1901 Query 170355 ATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACT 170414 |||||| |||||||||||||| |||||||||||||| || || || |||||||| | | Sbjct 1902 ATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTGGGCGTTT 1961 Query 170415 TATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATT 170474 || |||||||| ||| || ||||| ||| | | ||||||||| | ||| ||| Sbjct 1962 GATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAGCTGCATG 2021 Query 170475 CCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAA 170534 || |||||| | |||||||| ||| | | ||||| | || |||||||||||||| || Sbjct 2022 GCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTAACCTAAA 2081 Query 170535 TGGATTTAACTTCAACCAGTCAATCGTAGATGGATCT---GGTAAAGTAGTTCCTACATG 170591 || || ||||| ||||| ||| | ||||| ||| ||| ||| || ||||| Sbjct 2082 CGGTTTCAACTTTAACCAATCAGTTGTAGA---CTCTCAAGGTCGTGTAATTAACACATG 2138 Query 170592 GGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACA 170651 ||| ||| || | ||| | || |||||||||||||| |||||||| || ||||| || || Sbjct 2139 GGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACGCTCA 2198 Query 170652 CAACTTCCCACTTGACTTGGC 170672 |||||||||||||||||| || Sbjct 2199 CAACTTCCCACTTGACTTAGC 2219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582843067648800