Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq264 145 2e-29 seq33 140 7e-28 seq47 98.7 2e-15 seq522 86.0 1e-11 >seq264 Length=364395 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||||||||| ||||| || || ||||| ||||| || || ||||| | ||||| Sbjct 32651 CAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGTCCATC 32592 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || ||||| || || || ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 32591 CTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC 32532 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || |||||| || ||||||||||| ||| || || || | || | || Sbjct 32531 CTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGT 32472 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| || || || || | |||||| Sbjct 32471 CTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| || || || ||||| ||||||||||| | || || ||||||||| Sbjct 31204 TGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACCGTCCTCGAGCTGC 31145 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || || |||||||| || || || ||||| |||||||| ||| Sbjct 31144 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCT 31103 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 |||||||| || ||||| ||||| || |||||||| | ||||| ||||||||||| || Sbjct 31535 GTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTACGACCATCCTCGAGCTGCTTGCCA 31476 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || ||||| | || || ||||| || || |||||| Sbjct 31475 GCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCT 31440 >seq33 Length=490745 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || |||||||| || || || |||||||| || | ||| | ||||| || Sbjct 197516 AACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCCTC 197457 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || || || ||||| ||||||||||| || ||||| || Sbjct 197456 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 197397 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| || ||||||||||| || ||||| || || || | ||||| Sbjct 197396 AATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTCTT 197337 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 197336 GCCAGTCAGGGTCTTGACAAAGATCTGCAT 197307 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || ||||| || || ||||| ||||| || || | ||| | ||||| || Sbjct 196151 ACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTACGGCCATCCTCA 196092 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | || || ||||| |||||||| || || ||||| ||| Sbjct 196091 AGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGA 196032 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || ||||||||||| || |||||||| | || | ||||| Sbjct 196031 ATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACTTCCAAAGTGATGGTCTTG 195972 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || || || | |||||| Sbjct 195971 CCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 >seq47 Length=350483 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 194917 TATCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGA 194976 || ||||| ||||| ||||| || | || || || || ||||| ||||| || || | | Sbjct 106363 TACCTGAGCCTCAACACAAGATGTAAGGTTGATTCCTTCTGAATGTTGTAGTCTGCCAAA 106422 Query 194977 GTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATG 195036 || || ||||| || | |||||| || || ||||| || || || || || || |||||| Sbjct 106423 GTCCTGCCATCCTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCAGGTGGAATG 106482 Query 195037 CCTTCTTTGTCTTG 195050 ||||||||||| || Sbjct 106483 CCTTCTTTGTCCTG 106496 >seq522 Length=63498 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 125513 TTCAG-GTATCCCTTCCAAAGAAACACGGCAGGGGAGGACAATCTGCTTTGCGTTTTGAG 125571 ||||| ||| | | |||||||| |||||||| ||||| || || || | ||||||| | Sbjct 11926 TTCAGTGTAGACTTGCCAAAGAAGCACGGCAGAGGAGGGCAGTCAGCCCTTCGTTTTGCG 11867 Query 125572 AGACTTCGAAAAGAAAAGAGACACAACTATTTGAGGAAAGTCGCAGAGAATGCAACTCAA 125631 | || |||| |||||| ||||||||||| | | || || ||||||| || || Sbjct 11866 CGGCTGCGAATGGAAAAGCGACACAACTATGTACGAAAGGTTGCAGAGACAGCTGTGCAG 11807 Query 125632 TGTTTTTTGCAAGACAACAAGTGCAACGTCATTGGGATTGTCATTGCTGGATCGGCAGAG 125691 | ||| | || ||||| ||| || || ||||| ||||||| || || || Sbjct 11806 TTTTTCATATCAGGGGACAAGGTCAATGTGGCCGGCATTGTTCTTGCTGGTTCAGCTGAC 11747 Query 125692 TTCAAAACAAAGCT 125705 |||||||| |||| Sbjct 11746 TTCAAAACTGAGCT 11733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109471976287259