Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq264 96.9 2e-15 seq33 84.2 1e-11 >seq264 Length=364395 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| || | ||||| ||| ||| ||||||||||| ||||| | || | ||| |||| Sbjct 32651 CAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGTCCATC 32592 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||||||| || ||||| || || || |||||||| | || | ||||||||||| Sbjct 32591 CTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC 32532 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| ||||| | || | || | ||| || || | || ||||| Sbjct 32531 CTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGT 32472 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | ||||| |||||||| ||||| Sbjct 32471 CTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 >seq33 Length=490745 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCA 34847 ||| ||||||||||| ||||| | |||| | || |||| || ||||| || || ||| Sbjct 196134 TTCCTTCTGAATGTTGTAGTCTGCCAAAG--TACGGCCATCCTCAAGCTGCTTGCCAGCA 196077 Query 34848 AATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG 34907 || || | || |||||||| | || | ||||||||||| |||||| |||||| Sbjct 196076 AAGATCAACCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGGATTTGACA 196017 Query 34908 GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || | || | ||| || || | || ||||| || || || |||||||| Sbjct 196016 TTGTCAATGGTGTCTGATGACTCCACTTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTG 195957 Query 34968 ACAAAGATCTGCAT 34981 |||||||| ||||| Sbjct 195956 ACAAAGATTTGCAT 195943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630921468456