Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq26 681 0.0 seq17 86.0 7e-12 >seq26 Length=15232 Score = 681 bits (754), Expect = 0.0 Identities = 752/996 (76%), Gaps = 12/996 (1%) Strand=Plus/Minus Query 83967 ACTGACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCA 84026 ||||| || | || | |||||||| || ||||||||||||||||| || |||||||| Sbjct 2225 ACTGAAGCTAAGTCAAGTGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATACCT 2166 Query 84027 AGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACA 84086 || ||||| || | | || ||||| || || | ||||| ||| || ||| Sbjct 2165 AGGTTAGCACGGTTGATAATGTCAGCCCATGTGTTAATTACACGACCTTGAGAGTCTACA 2106 Query 84087 AGACTCTGATTG----AAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAG 84142 | ||||||| ||||| || || || || ||||||||||| || | ||| | Sbjct 2105 A----CTGATTGGTTAAAGTTGAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAA 2050 Query 84143 AGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACT 84202 ||||| |||||| || || || |||||||| ||||| ||||| ||||| | |||||| Sbjct 2049 AGCAGTAAACCAGATCCCTACTACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGA 1990 Query 84203 ATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAAT 84262 |||||||| ||||| || ||||| || | ||| || ||||| ||||| ||||||||||| Sbjct 1989 GTTGTTGAAAGAAGCGTATTGGAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAAT 1930 Query 84263 ATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGT 84322 || |||||||| |||||||||||||| |||||||| | ||| || || || || Sbjct 1929 GTTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGT 1870 Query 84323 AGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCC 84382 ||||| ||||||| || ||||| || | |||||||||||| |||||||| |||| || Sbjct 1869 TGTTTCACGGATTAATGATGAAGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACC 1810 Query 84383 ACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGC 84442 ||| |||||||| ||||| || |||||||| || || ||||| | |||||| || || || Sbjct 1809 ACCAAATACACCTGCAACACCTAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGC 1750 Query 84443 CTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAA 84502 ||||| |||| ||| |||| || || ||||||||||| | ||||| || ||| || Sbjct 1749 TTGGAATACAATCATAAAGTTAAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAA 1690 Query 84503 AGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGA 84562 ||| ||||| |||| ||| || | || ||| ||||||| || ||||||||||| ||||| Sbjct 1689 AGACCCTTGACCGATAGGGTAGATAATGAACACAGCAGTAGCAGCTGCAACTGGTGCAGA 1630 Query 84563 GTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACC 84622 |||||| ||| ||||| || |||||||| | ||| | ||||| ||||||||||| || Sbjct 1629 GTAAGCTACAGCAATCCAAGGGCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCC 1570 Query 84623 CATGTAAGCAA-ATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCAT 84681 |||||| |||| || |||| | | ||||| | ||||| | ||| ||||| ||||| | Sbjct 1569 CATGTA-GCAACATACACCTAAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGT 1511 Query 84682 TATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAG 84741 | |||| ||| || || | | ||||||||||| || || ||||| |||| |||||| | Sbjct 1510 TGTATAACCACTCATCTAAAGAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTG 1451 Query 84742 CATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAG 84801 |||| || | ||||| || |||||||| || |||||||||||||||| || ||||||| Sbjct 1450 CATTTGAAGTAGGAACAACAGCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAG 1391 Query 84802 CGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGA 84861 ||||||||||| |||||||| || || || || || || | || |||||||| || | Sbjct 1390 ACACTGGCTCACGAATACCGTCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAATAA 1331 Query 84862 A-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAG 84920 | |||| || |||| | ||||| || ||||| | | ||||||||||||| ||| Sbjct 1330 ACACAGTT-GTTGCAGTTAAAAGAGTAGGGATCATTAAAACACCAAACCAACCAATGTAG 1272 Query 84921 ATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 |||||||| | ||| || || ||||| ||||| ||| Sbjct 1271 ATACGGTTTTCAGTTGAAGTTACCCACTCACAAAAG 1236 >seq17 Length=65237 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/178 (72%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 84533 TACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACC 84592 |||||||| || ||||||||||| ||| |||| | ||| ||||| | ||||||||| Sbjct 34054 TACAGCAGTAGCAGCTGCAACTGGTGCATAGTAGGGGACAGCAATCCAAGTACGCATACC 34113 Query 84593 GAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAA-ATGCACCAATCAGGAAGT 84651 | ||| | || ||||||||||||||| |||||| ||||| || ||| | | ||| | Sbjct 34114 TAAACGGGAAGAGAGTTCCCATTCACGAACCATGT-AGCAACATAGACCTA-AAAGAAAT 34171 Query 84652 GAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGC 84709 | | ||||| | ||| ||| || || || | || || |||| | | |||||| Sbjct 34172 AACATACAACTAATTGGTAAAAACCGCCGTTGTCTAATCACTCGTTTAAAAATGCTGC 34229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571268765597160