Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq172 89.7 4e-12 seq33 86.0 5e-11 >seq172 Length=306164 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| || || || ||||| || || |||||||| || ||||| Sbjct 302762 GCTGTCATTACCGTGCCAGCCTACTTCAACGACTCCCAGCGGCAAGCTACAAAGGATGCA 302703 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || ||||||||||| || |||| | || ||||||||||| || || || || ||||| Sbjct 302702 GGCCGTATTGCTGGCCTGGATGTGCAGCGCATTATCAATGAGCCCACGGCCGCAGCACT 302644 >seq33 Length=490745 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || ||||| ||||| ||| || ||| ||||| || || | ||| | Sbjct 196160 AGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTACGG 196101 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| ||||| || || || ||||| || | | ||||| ||||||||||| || || Sbjct 196100 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACCCTCC 196041 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || ||||| || ||| || ||||| || || | ||| | || ||| | ||| Sbjct 196040 TTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTG-ATGACTCCACTTCCAAAGT 195982 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || ||||| ||||| || || || |||||||| Sbjct 195981 GATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029260197186730