Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq26 506 6e-139 >seq26 Length=15232 Score = 506 bits (560), Expect = 6e-139 Identities = 712/991 (72%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 |||||||||||||| || ||||| |||||| |||| | || ||||| || || | Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 25862 ATGATACCCTGCT-TACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| || | | | || || || ||| ||||| |||| || | ||||| | Sbjct 1297 ATGAT-CCCTACTCTTTTAACTGCAACAAC-TGTGTTTATTATTGCATTTGTAGCAGCTC 1354 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | ||||| || || || || || ||||||||||| || || || | |||||||||||| Sbjct 1355 CTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACA 1414 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 | || || || || || || || || | || || ||||| || |||| || ||||| | Sbjct 1415 ACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAA 1474 Query 26040 TCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 |||||||||| | | | || |||||| ||||||| || || || || ||| | || Sbjct 1475 TCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTG 1534 Query 26100 TCTTCCACTTCTTAATAGGAGTA-GCAGC-ATATGCAGGGAGACAGTGGGAACTATCTTA 26157 | | |||||| || |||| ||| | || | ||| ||| | | ||||| || |||| Sbjct 1535 TATGCCACTTTTTCTTAGGTGTATGTTGCTACATG--GGGCGTGAATGGGAGCTTTCTTT 1592 Query 26158 CAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCT 26217 | | |||| ||| | || ||||| ||| || || | |||||| | | || ||| Sbjct 1593 CCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTAC 1652 Query 26218 CGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGG 26277 || |||||| | | || ||| |||| |||||| ||||||||| || ||||| | || Sbjct 1653 TGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGG 1712 Query 26278 TATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCA 26337 |||||| |||||||||||||||||| | ||||||||||| || || || || | ||||| Sbjct 1713 TATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCA 1772 Query 26338 CCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCA 26397 ||| ||||| ||| |||||||| || || || ||||| |||||||| |||||||||| Sbjct 1773 CCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCA 1832 Query 26398 CGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTA 26457 || || || ||||| ||| | || ||||| || ||| | || || | Sbjct 1833 TGGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGA 1892 Query 26458 TGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTT 26517 || || || || || ||||| ||||| || || || ||||| ||||| ||||| ||||| Sbjct 1893 AGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTT 1952 Query 26518 TGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCT 26577 |||| | || ||||| || || || ||| || ||| |||||| | || ||||| | Sbjct 1953 TGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTT 2012 Query 26578 TGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATT 26637 ||| | ||||| || || || || ||| | || || | ||||| | || |||||||| Sbjct 2013 AGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATT 2072 Query 26638 TAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACC 26697 ||||||||| ||||| ||||||||||| ||||| ||||| | | || |||| Sbjct 2073 TAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAA 2132 Query 26698 TACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAA 26757 ||||||||||| | | ||||| |||||||| || | || || |||||||| ||||| Sbjct 2133 CACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAA 2192 Query 26758 TGCTCATAACTTTCCACTTGACTTAGCATCA 26788 ||||| ||||| |||||||||||||| ||| Sbjct 2193 CGCTCACAACTTCCCACTTGACTTAGCTTCA 2223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146725220411448