Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq26 612 6e-171 >seq26 Length=15232 Score = 612 bits (678), Expect = 6e-171 Identities = 731/986 (74%), Gaps = 6/986 (1%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| |||||||||||||||||||| || |||||||||||||| |||||||| ||||| Sbjct 2219 GCTAAGTCAAGTGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATACCTAGGTTA 2160 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | | || ||||| ||| || | | ||| |||||| || ||||| Sbjct 2159 GCACGGTTGATAATGTCAGCCCATGTGTTAATTACACGACCTTGAGAGTCTACAACTGAT 2100 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || || ||||| || ||||| || ||||| |||||||| || || || | || |||| | Sbjct 2099 TGGTTAAAGTTGAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAAAGCAGTAAAC 2040 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | || || ||||| | ||| | |||||| |||||| ||| ||||| || Sbjct 2039 CAGATCCCTACTACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGAGTTGTTGAAA 1980 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 ||| || ||||| || | | ||||||||| || || || ||||||||||| || ||| Sbjct 1979 GAAGCGTATTGGAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAATGTTGTAAGTT 1920 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGA 5554 ||||| ||||| |||||||| || || | ||| ||| | ||||||||||||| Sbjct 1919 TCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGTTGTTTCACGG 1860 Query 5555 ATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACC 5614 || | || ||||| || | ||||||||||||| ||| | || ||||| ||||| Sbjct 1859 ATTAATGATGAAGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACCACCAAATACA 1800 Query 5615 CCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACG 5674 || |||||||| | ||||||||| || ||||| | ||| ||||| || || |||||||| Sbjct 1799 CCTGCAACACCTAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATACA 1740 Query 5675 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGT 5734 | |||||||||||||||||| |||||||| | |||||||| ||||| ||| || || Sbjct 1739 ATCATAAAGTTAAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAAAGACCCTTGA 1680 Query 5735 CCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTAC 5793 |||| |||||| | | || || | |||| || || ||||| ||||| || || ||||| Sbjct 1679 CCGATAGGGTAGATAATGAACACAGCAGTA-GCAGCTGCAACTGGTGCAGAGTAAGCTAC 1621 Query 5794 GCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGC 5853 |||||| || ||||| ||||| | | || ||| ||||||| || |||| || ||| Sbjct 1620 AGCAATCCAAGGGCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCCCATGT-AGC 1562 Query 5854 TGCGATACCAATAAG--GAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGC 5911 | |||| |||| |||||| | || || | |||||| || || || ||||| | | Sbjct 1561 AAC-ATACACCTAAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGTTGTATAAC 1503 Query 5912 CATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAG 5971 || ||||| | | |||||||||||||| || ||||||||||| |||||||| || || Sbjct 1502 CACTCATCTAAAGAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTGCATTTGAA 1443 Query 5972 CTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGT 6031 | || ||||| || || || || ||||||||||| || | || || || | || || Sbjct 1442 GTAGGAACAACAGCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAGACACTGGC 1383 Query 6032 TCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTA 6091 ||||| || ||||||||||| || || || || ||||| ||||| | ||||| |||| Sbjct 1382 TCACGAATACCGTCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAATAAACACAGTT 1323 Query 6092 GTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTG 6151 ||||| ||||| || | || |||||||| ||||||||||| || | |||| ||||| Sbjct 1322 GTTGCAGTTAAAAGAGTAGGGATCATTAAAACACCAAACCAACCAATGTAGATACGGTTT 1263 Query 6152 TTGGTGCTAGTAACCCAGTCACAGAA 6177 | || ||| ||||| ||||| || Sbjct 1262 TCAGTTGAAGTTACCCACTCACAAAA 1237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152648372792622