Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq26 581 1e-161 >seq26 Length=15232 Score = 581 bits (644), Expect = 1e-161 Identities = 726/995 (73%), Gaps = 0/995 (0%) Strand=Plus/Minus Query 25450 GATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAG 25509 || ||||||||||| ||||||||||| |||||||| || ||||| || ||||| |||| | Sbjct 2222 GAAGCTAAGTCAAGTGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATACCTAGG 2163 Query 25510 TCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACT 25569 | |||||||| | |||||||||||| || | || | || | || || || ||| Sbjct 2162 TTAGCACGGTTGATAATGTCAGCCCATGTGTTAATTACACGACCTTGAGAGTCTACAACT 2103 Query 25570 GACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTA 25629 || || || ||||| || ||||| || ||||| |||||||| || | || | ||| ||| Sbjct 2102 GATTGGTTAAAGTTGAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAAAGCAGTA 2043 Query 25630 AGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTA 25689 | ||| || | || ||||| ||||| | |||||| |||||| ||| || || Sbjct 2042 AACCAGATCCCTACTACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGAGTTGTTG 1983 Query 25690 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 25749 || ||| || ||||| || | | ||||||||| || || || ||||||||||| || Sbjct 1982 AAAGAAGCGTATTGGAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAATGTTGTAA 1923 Query 25750 GTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCA 25809 || ||||||||||| |||||||| || || | ||| ||||| | ||||||||||| Sbjct 1922 GTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGTTGTTTCA 1863 Query 25810 CGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | ||| ||||| || | || |||||||||| ||| | || ||||| ||| Sbjct 1862 CGGATTAATGATGAAGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACCACCAAAT 1803 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || ||||||||||| | ||| ||||| || ||||| | ||| ||||| || || || || Sbjct 1802 ACACCTGCAACACCTAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGCTTGGAAT 1743 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| |||||| || ||||| ||||| ||||| | |||||||| ||| ||| |||| Sbjct 1742 ACAATCATAAAGTTAAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAAAGACCCT 1683 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || || | |||||||| | ||| |||||| || |||||||| || || || |||||| Sbjct 1682 TGACCGATAGGGTAGATAATGAACACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCT 1623 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| ||||| || | ||| |||| | || ||| ||||||| || |||| ||| Sbjct 1622 ACAGCAATCCAAGGGCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCCCATGTAG 1563 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 | | || | || ||||||| | |||| | ||| || || |||||||| || ||| Sbjct 1562 CAACATACACCTAAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGTTGTATAAC 1503 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 ||||| || | | || ||||||||||||||||||||||| | ||| ||||| || || Sbjct 1502 CACTCATCTAAAGAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTGCATTTGAA 1443 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 | || || | || || ||||| ||||||||||| || | | | || || || ||| Sbjct 1442 GTAGGAACAACAGCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAGACACTGGC 1383 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349 ||||||||||| || || ||||| ||||| || || ||||||||||| | ||| | || Sbjct 1382 TCACGAATACCGTCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAATAAACACAGTT 1323 Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409 ||| |||||||| | ||||||||||| || |||||||| || | |||| ||||| Sbjct 1322 GTTGCAGTTAAAAGAGTAGGGATCATTAAAACACCAAACCAACCAATGTAGATACGGTTT 1263 Query 26410 TTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 26444 | || || ||||| ||||| || | | |||| Sbjct 1262 TCAGTTGAAGTTACCCACTCACAAAAGCGTGCCCA 1228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151992378066452