Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq264 100 2e-16 seq33 98.7 8e-16 >seq264 Length=364395 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || ||| ||| || || || ||||| |||| | | || Sbjct 31784 AGACGCAGCACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGG 31725 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| ||||| ||||| || || | || | ||||||| Sbjct 31724 CCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 31665 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | ||||| | ||| ||||||| || Sbjct 31664 TTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAAGACTCAACCTCCAAAGTG 31605 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || ||||| || ||||| Sbjct 31604 ATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 31567 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || ||| || || ||||| ||||| |||| ||| | || Sbjct 32656 AGACGCAACACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGT 32597 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || || ||||| ||||| ||||| || || | || | ||||||| Sbjct 32596 CCATCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 32537 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | ||||| | ||| ||||||| || Sbjct 32536 TTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTG 32477 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || ||||| || ||||| Sbjct 32476 ATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 32439 >seq33 Length=490745 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| || || ||| ||| || || || |||||||||| | | | || | || || Sbjct 197515 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGGCCATCCTCA 197456 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| ||||| ||||| || || | |||| |||||||||||| | Sbjct 197455 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 197396 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | ||||| | ||||||||||| || || || || Sbjct 197395 ATCTTGGACTTGACATTGTCAATGGTGTCTGATGACTCCACCTCCAGTGTGATTGTCTTG 197336 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || ||||| |||||||| Sbjct 197335 CCAGTCAGGGTCTTGACAAAGATCTGCAT 197307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || ||| || || ||||| ||||| || | | | | || Sbjct 196160 AGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTACGG 196101 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| |||| ||||| || || | |||| |||||| Sbjct 196100 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACCCTCC 196041 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | ||||| | |||||| |||| || Sbjct 196040 TTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACTTCCAAAGTG 195981 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || ||||| || ||||| Sbjct 195980 ATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 195943 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || ||||||||||| || || ||| ||| || ||||| ||||| |||| Sbjct 195942 GCCTCCTCTCAGACGCAACACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGC 195883 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || || | |||||| || ||||| ||||| ||||| || || | ||| Sbjct 195882 AAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 195823 Query 48659 AACGCC 48664 || ||| Sbjct 195822 AATGCC 195817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934456907671