Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq26 710 0.0 >seq26 Length=15232 Score = 710 bits (786), Expect = 0.0 Identities = 752/986 (76%), Gaps = 10/986 (1%) Strand=Plus/Plus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||| | ||||| || ||| ||| || || ||||| | |||||||| ||||| || ||| Sbjct 1240 TGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTAATG 1299 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||| | | | ||| ||||| || || |||||||| | ||||| ||||| Sbjct 1300 ATCCCTACTCTTTTAACTGCAACAACTGTGTTTATTATTGCATTTGTAGCAGCTCCTCCT 1359 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || || ||||| ||||| | || || || | ||||| || | || || |||||||| Sbjct 1360 GTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAACATT 1419 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 |||||||||||||| ||||||| ||||||||| |||||| | |||||||| || |||||| Sbjct 1420 ATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAATCTGG 1479 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 |||||||| || | ||||||||||| || || ||||| |||| |||| | || || | | Sbjct 1480 GAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTATGC 1539 Query 162802 CACTTC--CTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCT 162859 ||||| |||| | || || ||| || ||| | ||||| ||||||| ||| | Sbjct 1540 CACTTTTTCTTAGGTGTATGTT-GC-TACATGGGGCGTGAATGGGAGCTTTCTTTCCGTT 1597 Query 162860 TAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTG 162919 |||||||||| |||||||| ||| || |||||||||||||| | || || |||| Sbjct 1598 TAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTG 1657 Query 162920 TGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTT 162979 ||||| | |||| ||| |||||||||| ||||| ||||| ||||| | ||||| | Sbjct 1658 TGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTATCT 1717 Query 162980 CTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCT 163039 | ||||||||||||| ||| | || |||||||| |||||||||||| |||||||||| | Sbjct 1718 CAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCTT 1777 Query 163040 TCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTT 163099 |||| ||| | || || ||||||||||| |||||||| || || ||||||||| |||| Sbjct 1778 TCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATGGTT 1837 Query 163100 CTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTT 163159 | | || ||||| || | ||| | ||||| |||||| | | || ||| | |||| Sbjct 1838 CATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAGGTT 1897 Query 163160 ATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTC 163219 | || ||||| ||||||||||| |||||||||||||||||||| || || |||||||| | Sbjct 1898 ACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTGGGC 1957 Query 163220 GCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTG 163279 | ||||| ||||| || || |||||||||||||||||||| | ||||||||| | |||| Sbjct 1958 GTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAGCTG 2017 Query 163280 CATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACC 163339 ||| || || || | |||||||| ||||| | ||| | |||||||||||||| |||| Sbjct 2018 CATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTAACC 2077 Query 163340 TTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATTCCTA 163396 | |||||||||||||| |||||||| || || ||| | |||| || || ||| | Sbjct 2078 TAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGT---GTAATTAACA 2134 Query 163397 CTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATG 163456 | ||||| || || | ||| | || || |||||||| || |||||||| ||||| | Sbjct 2135 CATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACG 2194 Query 163457 CTCACAACTTCCCACTTGACCTTGCT 163482 |||||||||||||||||||| | ||| Sbjct 2195 CTCACAACTTCCCACTTGACTTAGCT 2220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553080119519880