Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq386 102 2e-16 seq80 84.2 4e-11 >seq386 Length=203426 Score = 102 bits (112), Expect = 2e-16 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 213480 GGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATG 213539 || ||||| ||| ||||||||||| || || || | || | |||||||||| Sbjct 96887 GGAAGGGCAATGGATGCCAGGTTGCAGACAGCTGATTCTTCAGGGCTGGTGTACTCCACA 96828 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 ||||| ||||| || |||||||| ||||||||||||||| || || || ||| ||||| Sbjct 96827 ATCTCAGTGCAGAGATTGCTGCACTTGATGGTGCCCAGGTTTTGCTGATTGGAC-TTGCG 96769 Query 213600 TTGGCAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 | |||| |||||||| |||||||| ||| || ||||| | ||| Sbjct 96768 GTTGCAGCTGTCCTTGTACAGCATGTATGGGTTGCCAGTCTCAACCTG 96721 >seq80 Length=281555 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| ||| |||||||| |||| | || || || | |||||||||| |||||||| Sbjct 177746 TAGAGCAGGCATGCAAAGTCTGTGTGGAGCCCCTCATCTCTGCTGATGAGCTCGTTGGAG 177687 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAAT 48225 ||| ||||||| |||||| ||| | || || | |||||| || Sbjct 177686 AAGGTGAGACCATGCATGAACCCTCGCTTCTTCAACCAGAAGAT 177643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931524916903680