Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq386 102 2e-16 seq80 98.7 2e-15 >seq386 Length=203426 Score = 102 bits (112), Expect = 2e-16 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 ||||||| | |||||||| || || || || || | |||| |||| | ||| Sbjct 96884 AGGGCAATGGATGCCAGGTTGCAGACAGCTGATTCTTCAGGGCTGGTGTACTCCACAATC 96825 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 || || ||||| ||||||||||||||||| ||||||| | ||||| |||||||| || Sbjct 96824 TCAGTGCAGAGATTGCTGCACTTGATGGTGCCCAGGTTTTGCTGATTGGACTTGCGGTT- 96766 Query 221822 GCAGC-GTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTG 221865 ||||| ||||||||| ||||| | || ||||||||| | ||| Sbjct 96765 GCAGCTGTCCTTGTACAGCATGTATGGGTTGCCAGTCTCAACCTG 96721 >seq80 Length=281555 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 |||||||||| | ||| || ||| ||||| || || ||| |||||||||||||| Sbjct 177642 CATCTTCTGGTTGAAGAAGCGAGGGTTCATGCATGGTCTCACCTTCTCCAACGAGCTCAT 177701 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 |||||| || ||||| ||||||| ||| ||||| |||||||||||| || Sbjct 177702 CAGCAGAGATGAGGGGCTCCACACAGACTTTGCATGCCTGCTCTACTCG 177750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928836939650880