Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq26 740 0.0 seq7 554 5e-153 seq17 84.2 2e-11 >seq26 Length=15232 Score = 740 bits (820), Expect = 0.0 Identities = 771/1005 (77%), Gaps = 6/1005 (1%) Strand=Plus/Plus Query 8223 ACAATCCCAAAGCACTT-GGGAAAATTTTTGCGAATGGGTCACTTCGACCAATAATCGCT 8281 |||| ||||| ||||| ||| | ||||| || ||||| ||||| || | || || Sbjct 1214 ACAA-CCCAA--CACTTTGGGCACGCTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTA 1270 Query 8282 TGTATGTCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGCT 8341 | || | || |||||||| ||| | |||||||| || ||| | | || |||| | | Sbjct 1271 TCTACATTGGTTGGTTTGGTGTTTTAATGATCCCTACTCTTTTAACTGCAACAACTGTGT 1330 Query 8342 TCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTG 8401 | |||| ||||| || || ||||||||||||||||||||||| || || || ||||| Sbjct 1331 TTATTATTGCATTTGTAGCAGCTCCTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGT 1390 Query 8402 CTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACG 8461 |||| || || ||||||| |||||||| ||||||||||| |||||||| | || || | Sbjct 1391 CTGGTTCCCTGTTGTACGGAAACAACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATG 1450 Query 8462 CAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACA 8521 ||||||| | ||||||||||| ||||||||||| |||||| | ||||||||| | |||| Sbjct 1451 CAATTGGTTTACACTTCTACCCAATCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACA 1510 Query 8522 ACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCT-TTGCTTATATG 8580 |||||||||||||||| | || || | |||||| || | || || | |||| || ||| Sbjct 1511 ACGGTGGTCCTTACCAATTAGTTGTATGCCACTTTTTCTTAGGTGTATGTTGC-TACATG 1569 Query 8581 GGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 8640 || ||||||||||| ||||||| ||| | || ||||| |||||||| ||| || ||| Sbjct 1570 GGGCGTGAATGGGAGCTTTCTTTCCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTAC 1629 Query 8641 TCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCG 8700 ||||| || ||||| |||||| ||||||| ||| || |||| ||| | |||||||| || Sbjct 1630 TCTGCACCAGTTGCAGCTGCTACTGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCT 1689 Query 8701 TTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAG 8760 || ||| |||||||| | |||||||| ||||| || |||| |||| |||| ||||| Sbjct 1690 TTTAGTGACGGTATGCCCTTAGGTATCTCAGGTACTTTTAACTTTATGATTGTATTCCAA 1749 Query 8761 GCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGC 8820 ||||||||||||||| | |||||||| ||||||||| | |||||||| ||||| || || Sbjct 1750 GCTGAGCACAACATCTTAATGCACCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGT 1809 Query 8821 GGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACC 8880 || ||||| || || || |||||||||||| | || ||||| || | | ||||| || Sbjct 1810 GGTTCTCTTTTCTCTGCTATGCATGGTTCATTAGTAACTTCATCATTAATCCGTGAAACA 1869 Query 8881 ACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAAC 8940 || || | | | ||| ||| | || ||||| |||||||||||||| |||||||||||| Sbjct 1870 ACTGAGAACCAATCTGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAAC 1929 Query 8941 ATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAAT 9000 |||||||| || || || |||||||| || ||||| |||||||| || ||||| ||||| Sbjct 1930 ATTGTTGCTGCGCACGGTTACTTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAAC 1989 Query 9001 TCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCC 9060 || | || || |||||| | ||||| ||||| || || || ||||||||||| || Sbjct 1990 TCACGTTCTTTACACTTCTTCTTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCT 2049 Query 9061 CTCGGCGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATC 9120 | || | || || ||||| || ||||| || || |||||||| ||||| || || | Sbjct 2050 TTAGGTATATCAACTATGGCATTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTA 2109 Query 9121 GACGGACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGT 9180 ||| ||||| || || | ||||| ||||| ||| | | ||||| || || ||| Sbjct 2110 GACTCTCAAGGTCGTGTAATTAACACATGGGCTGACATTATCAACCGTGCTAACCTAGGT 2169 Query 9181 ATGGAAGTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGAC 9225 ||||| || ||||||||| | ||||| ||||||||||| |||||| Sbjct 2170 ATGGAGGTAATGCACGAACGTAACGCTCACAACTTCCCACTTGAC 2214 >seq7 Length=22195 Score = 554 bits (614), Expect = 5e-153 Identities = 720/995 (72%), Gaps = 0/995 (0%) Strand=Plus/Plus Query 9812 TGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCT 9871 |||||||| | | ||||| ||| | || || || ||||||||||| |||||||| Sbjct 4108 TGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGGTCA 4167 Query 9872 GGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACG 9931 || || | || ||||| || || |||||||| | ||||| ||| | ||||| | ||| Sbjct 4168 GGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATTACT 4227 Query 9932 TTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTC 9991 ||||| || |||||| |||||||| | |||| ||||| ||| || ||| ||||||| Sbjct 4228 TTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAATTTC 4287 Query 9992 CTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 10051 | || || || || ||||| || || | ||||||||||||| | | | |||||| Sbjct 4288 TTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCTTTGG 4347 Query 10052 GGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTT 10111 || || || |||| ||||| || ||| | || | || || || ||||| ||| Sbjct 4348 GGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGCATTT 4407 Query 10112 GTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCG 10171 || || || || ||||| || |||||||| || |||||||||||||| ||||| | || Sbjct 4408 GTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAATTGCT 4467 Query 10172 AGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTT 10231 | | | | || | || |||||||||||||| |||||||| | ||||||||||||||| Sbjct 4468 CGTTCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGTTTTT 4527 Query 10232 GTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTC 10291 || |||||| | || || || | || |||||| ||||||| ||||| || ||||| Sbjct 4528 GTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAGTTTT 4587 Query 10292 GGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTC 10351 || | || | || || || ||| |||| || |||| || || || || ||||| | Sbjct 4588 GGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGACTTTA 4647 Query 10352 AATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATC 10411 || || ||||| ||||||||||| |||||| || | || | || | || | || || Sbjct 4648 AACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGCGATT 4707 Query 10412 CACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAA 10471 ||||| | ||||| |||||||| |||| | ||||||| || |||||||||||| Sbjct 4708 CACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACACTTTCCGT 4767 Query 10472 GCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGG 10531 || ||| | ||||||| |||||| || || || | || || ||||| ||||||||| Sbjct 4768 GCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGTTTCTGG 4827 Query 10532 TCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTT 10591 || || || ||||| | |||||| || ||||| |||||||| || |||||| | ||| Sbjct 4828 TCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATGTTATTT 4887 Query 10592 GTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTT 10651 || || || | ||| | |||| | | |||| | | ||| | || | ||||| Sbjct 4888 GTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCATTAAATCTA 4947 Query 10652 CGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACG 10711 || ||||||||||| ||||||||||| || | || |||||||||||||||||||||| Sbjct 4948 CGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATTTGAGACT 5007 Query 10712 TTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGAC 10771 || || || || || || ||| | ||||||||| |||||||||||||||| | || Sbjct 5008 TTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGCTCAAGAT 5067 Query 10772 CAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGT 10806 || ||||| |||| |||| ||||| || || || Sbjct 5068 CAGCCACATGAAAAAATTGTATTCCCTGAGGAGGT 5102 >seq17 Length=65237 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 8570 TTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCT 8629 ||||| | |||| ||||||||||||||| |||| ||| | || |||||| ||||||| Sbjct 34153 TTGCT-ACATGGTTCGTGAATGGGAACTCTCTTCCCGTTTAGGTATGCGTACTTGGATTG 34095 Query 8630 GTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTA 8670 ||| | |||| ||| || ||||| |||||| |||||||| Sbjct 34094 CTGTCCCCTACTATGCACCAGTTGCAGCTGCTACTGCTGTA 34054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516475629288000