Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq33 102 5e-16 seq48 95.1 8e-14 >seq33 Length=490745 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || ||||| || || ||| || || || || || || | ||| Sbjct 196164 ACGCAGACGCAGCACCAGATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGT 196105 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||| ||||| |||||||| || | || || || ||||||||||| || Sbjct 196104 ACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCAGGAGGAATACC 196045 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| ||||||| ||||| || || | || | | || ||| Sbjct 196044 CTCCTTGTCCTGAATCTTGGATTTGACATTGTCAATGGTGTCTGATGACTCCACTTCCAA 195985 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || |||||||| || || ||||| Sbjct 195984 -AGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTG 195946 Score = 93.3 bits (102), Expect = 3e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || |||||||| | ||| | | ||| ||||| ||||| |||||||| || ||||| || Sbjct 197485 TTGTAATCAGCCAAAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGC 197426 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 || ||||||||||| || |||||||| |||||||| |||||| ||||| || || Sbjct 197425 TGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTC 197367 >seq48 Length=276317 Score = 95.1 bits (104), Expect = 8e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || |||||||| || ||||| |||| || ||||| || ||||| | Sbjct 122482 ATGCTGTTGTCACCGTCCCAGCATACTTCAATGACGCTCAGCGACAAGCCACCAAAGACG 122423 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| ||||| | || |||||||| ||||| ||||||||||| || Sbjct 122422 CTGGTGTCATTGCTGGTCTCACAGTGGAGCGTATTATCAATGAGCCAACAGCAGCAGCCA 122363 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| || |||||||| ||||| Sbjct 122362 TTGCCTACGGTCTTGACAAGAA 122341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268150160185196