Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq26 719 0.0 seq7 565 3e-156 seq262 96.9 4e-15 >seq26 Length=15232 Score = 719 bits (796), Expect = 0.0 Identities = 762/997 (76%), Gaps = 8/997 (1%) Strand=Plus/Plus Query 160867 TGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTC 160926 |||| || |||||| | ||||| || || || ||||| | || |||||||||| Sbjct 1228 TGGGCACGCTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTT 1287 Query 160927 GGCGTCCTGATGATTCCCTGCT-TGCTCGCTGCTACCATT-TGTTTCATCATTGCCTTCG 160984 || || | ||||| |||| || | | |||| || | | ||||| || ||||| || | Sbjct 1288 GGTGTTTTAATGAT-CCCTACTCTTTTAACTGCAACAACTGTGTTT-ATTATTGCATTTG 1345 Query 160985 TTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGT 161044 | | ||||| ||||||||||||||||| |||||||| || || ||||||| || ||| Sbjct 1346 TAGCAGCTCCTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGT 1405 Query 161045 ATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACT 161104 | ||||||||||| ||||||||||||||| | ||| |||| || || || ||| | |||| Sbjct 1406 ACGGAAACAACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACT 1465 Query 161105 TCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCC 161164 ||||||| |||||||||||||| | | || || ||| | |||||||||||||||| || Sbjct 1466 TCTACCCAATCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACC 1525 Query 161165 AACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCT--TACATGGGTCGTGAGTGGGA 161222 || | ||||| | |||||| | | || | |||| | |||||||| ||||| ||||| Sbjct 1526 AATTAGTTGTATGCCACTTTTTCTTAGG--TGTATGTTGCTACATGGGGCGTGAATGGGA 1583 Query 161223 ACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGC 161282 ||||||| |||| | || ||||| ||||||||| ||||| |||||||| || || || Sbjct 1584 GCTTTCTTTCCGTTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGC 1643 Query 161283 TGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAAT 161342 || || | ||| |||||| | |||| ||| |||||||||| ||||| ||| | || Sbjct 1644 AGCTGCTACTGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTAT 1703 Query 161343 GCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACAT 161402 ||| | || ||||| ||||| || |||| ||| |||| |||||||| ||||||||||| Sbjct 1704 GCCCTTAGGTATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACAT 1763 Query 161403 TCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAG 161462 | |||||||| ||||| ||| | || || |||||||| ||||| |||||||| ||| Sbjct 1764 CTTAATGCACCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTC 1823 Query 161463 TGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTC 161522 ||| ||||| ||||| | || || || || | | |||||||| || || ||| | || Sbjct 1824 TGCTATGCATGGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATC 1883 Query 161523 CCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCA 161582 ||| | |||||||| ||||||||||||||||| || |||||||| |||||||| || Sbjct 1884 TGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCA 1943 Query 161583 CGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCA 161642 ||| ||||| || ||| ||||||||||||||||||| ||||||||||| || || | || Sbjct 1944 CGGTTACTTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACA 2003 Query 161643 CTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCAC 161702 ||||||| | ||||| ||||| || || || |||||||| ||||| | || || || Sbjct 2004 CTTCTTCTTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAAC 2063 Query 161703 CATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAA 161762 |||||||| ||||| || ||||||||||| ||||| || | || || ||| ||| Sbjct 2064 TATGGCATTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCG 2123 Query 161763 AGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCA 161822 || || ||||| ||||| ||| || ||||||||||| || || ||||| || ||||| Sbjct 2124 TGTAATTAACACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCA 2183 Query 161823 CGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCT 161859 ||| || || |||||||||||||| |||||| | ||| Sbjct 2184 CGAACGTAACGCTCACAACTTCCCACTTGACTTAGCT 2220 >seq7 Length=22195 Score = 565 bits (626), Expect = 3e-156 Identities = 720/988 (73%), Gaps = 10/988 (1%) Strand=Plus/Plus Query 162147 GACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 162206 |||||||| |||||||| || ||||| || | | || ||||| || || ||||||||| Sbjct 4141 GACCGTTTTGTTTTTGTAGGTTGGTCAGGTTTATTACTCTTTCCTACAGCATATCTTGCT 4200 Query 162207 CTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCG 162266 | || || ||| | ||||||| |||||| || || ||||||||||||||| | || Sbjct 4201 TTAGGTGGATGGTTAACTGGGATTACTTTTGTAACTTCTTGGTATACTCACGGTTTAGCA 4260 Query 162267 AGTTCCTATCTTGAGGGTGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGC 162325 | | | || || ||| || ||||||| |||| |||||||| ||||||||| || Sbjct 4261 ACTAGTTTCCTAGAAGGTTGTAA-TTTCTTAACTGCTGCAGTTTCAACTCCAGCAAACAG 4319 Query 162326 TATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTG 162385 ||||||||||||| | || |||| ||||| || || ||||| || || | || || Sbjct 4320 TATGGGTCATTCTTTATTGTTTCTTTGGGGACCAGAAGCTCAATCTGATTTTACTCGTTG 4379 Query 162386 GTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGG 162445 || ||| | || || || ||| | ||||| || || || ||||| ||||| | || || Sbjct 4380 GTTTCAATTAGGCGGGCTTTGGGCATTTGTAGCTCTTCATGGAGCTTTTGCTTTAATTGG 4439 Query 162446 TTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTA----TTCGTCCTTACAATG 162501 ||| ||| | ||||| |||||| | || || || ||| ||||||||||||||| Sbjct 4440 TTTTATGTTACGCCAATTTGAAATTGCTCGT----TCAGTAAGACTTCGTCCTTACAATG 4495 Query 162502 CTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGG 162561 ||||||| || |||| ||||||||||| || ||| ||||||| | || || || || | Sbjct 4496 CTATTGCGTTTTCAGCACCTATTGCTGTTTTTGTTTCTGTTTTTTTAATTTACCCGTTAG 4555 Query 162562 GACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGC 162621 | || || ||||| || || || || || | || ||||||| |||||| | | Sbjct 4556 GTCAGTCTGGTTGGTTTTTTGCTCCTAGTTTTGGTATTGCTTCAATCTTTCGATTCATTC 4615 Query 162622 TCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAG 162681 | || ||||||| ||||| |||||||| |||| ||||| ||||||||||| ||||| | Sbjct 4616 TTTTTTTCCAAGGATTCCACAACTGGACTTTAAACCCTTTCCACATGATGGGAGTAGCTG 4675 Query 162682 GTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGT 162741 || | | |||| ||| ||||| | ||| ||||| || | || |||||||| || || | Sbjct 4676 GTGTATTAGGTGCTGCTTTGCTTTGTGCGATTCACGGTGCAACTGTTGAAAACACTCTTT 4735 Query 162742 ACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAA 162801 |||||||| || ||||||||||| |||||| || | || || | ||||||| Sbjct 4736 TTGAAGATGGTGATGGTGCAAACACTTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAA 4795 Query 162802 CGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTA 162861 |||| || | || || || || || |||||||| || || || ||| | |||||| | Sbjct 4796 CGTACTCTTTCGTGACAGCTAATCGTTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAA 4855 Query 162862 ACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTT 162921 |||| || ||| | || || |||||| | ||||| || || | ||| | |||| ||| Sbjct 4856 ACAAACGATGGCTTCACTTTTTTATGTTATTTGTGCCAGTAACTGGTTTATGGATGAGTG 4915 Query 162922 CTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAG 162981 | | ||| || | || | || | ||||| || |||||||| || |||||||||||| Sbjct 4916 CACTTGGTGTTGTAGGTTTAGCATTAAATCTACGAGCTTACGATTTCGTATCTCAAGAAA 4975 Query 162982 TTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATG 163041 ||||||| |||||||| ||||| |||||||| || || ||||| ||||||||| | || | Sbjct 4976 TTCGTGCAGCAGAAGATCCTGAATTTGAGACTTTTTACACAAAAAACATTCTTTTAAACG 5035 Query 163042 AAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTG 163101 |||| |||| |||||| | || | || || || ||||| || |||| ||||||| Sbjct 5036 AAGGTATTCGTGCATGGATGGCTGCTCAAGATCAGCCACATGAAAAAATTGTATTCCCTG 5095 Query 163102 AAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 | ||||| || ||| | || |||||||| Sbjct 5096 AGGAGGTATTACCACGTGGAAACGCTCT 5123 >seq262 Length=217181 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 ||||| |||||||||||||||||||| || |||| || ||||| |||||||| || Sbjct 216365 TACATTCTTGACGCAGCTGAGGAAGCTGGCATCGACCTGCCATACTCTTGCCGTGCTGGA 216424 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || ||||| || || || || | | ||||| ||||| ||||||||||| Sbjct 216425 GCCTGCTCGTCATGCGCTGGCAAGATTGAGGCTGGCGAGACTGACCAGAGCGACCAGTCA 216484 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 || ||||||| ||| |||| |||||| | ||||| || || |||| || || Sbjct 216485 TTTTTGGACGACAGCCAGGTCGAGAACGGTTTCGTCCTGACCTGCGTGGCTTACCCAACC 216544 Query 158521 AGTGAT 158526 || ||| Sbjct 216545 AGCGAT 216550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547742564689320