Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq26 554 1e-153 >seq26 Length=15232 Score = 554 bits (614), Expect = 1e-153 Identities = 725/998 (73%), Gaps = 4/998 (0%) Strand=Plus/Minus Query 17831 TGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAG 17890 ||||||||| || || |||||||| ||||| ||||| |||||||| || || | || || Sbjct 2223 TGAAGCTAAGTCAAGTGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATACCTAG 2164 Query 17891 GTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAAT 17950 |||||| | ||||| | |||||||||||| | || | ||| || |||||| Sbjct 2163 GTTAGCACGGTTGATAATGTCAGCCCATGTGTTAATTACACGACCTTGAGAGTCTACAAC 2104 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 |||||||| |||||||| || || || ||||| |||||||| || || || | || || Sbjct 2103 TGATTGGTTAAAGTTGAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAAAGCAGT 2044 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 || ||| || | || ||||| ||||| |||||||| |||| | | ||||| Sbjct 2043 AAACCAGATCCCTACTACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGAGTTGTT 1984 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || ||| || ||||| || | | ||||||||| || || || |||||||| || || Sbjct 1983 GAAAGAAGCGTATTGGAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAATGTTGTA 1924 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||||||||| || ||||| || || | ||| ||| | |||||| ||||| Sbjct 1923 AGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGTTGTTTC 1864 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 | || | ||| ||||| || | || |||||||||| ||| | || ||||| || Sbjct 1863 ACGGATTAATGATGAAGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACCACCAAA 1804 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| ||||||||||| | ||| ||||| || ||||| | ||| ||||| || |||||||| Sbjct 1803 TACACCTGCAACACCTAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGCTTGGAA 1744 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | ||| || || |||||||| ||||| | |||||||| ||| ||| ||| Sbjct 1743 TACAATCATAAAGTTAAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAAAGACCC 1684 Query 18371 TTGTCCAAAAGGATAAACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAG 18429 ||| || | ||| || | | || || | || || ||||||| |||||||| || |||| Sbjct 1683 TTGACCGATAGGGTAGATAATGAACACAGCAGTAG-CAGCTGCAACTGGTGCAGAGTAAG 1625 Query 18430 CAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGT 18489 | ||| |||||| ||||||||||||| | || ||| ||||||| || ||||||| Sbjct 1624 CTACAGCAATCCAAGGGCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCCCATGT 1565 Query 18490 AAGCTGC-GATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| | | || | || ||||||| | |||| | ||| || || || ||||| ||| Sbjct 1564 -AGCAACATACACCTAAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGTTGTAT 1506 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 |||||||| || | | || ||||||||||||||||||||||| | ||| ||||| || Sbjct 1505 AACCACTCATCTAAAGAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTGCATTT 1446 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | || || | || || || || ||||||||||| || | | || || || || Sbjct 1445 GAAGTAGGAACAACAGCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAGACACT 1386 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 |||||||||||||| || ||||| || |||||||| || ||||||||||| | ||| | Sbjct 1385 GGCTCACGAATACCGTCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAATAAACACA 1326 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 || | ||| |||||||| | ||||||||| | || |||||||| || | ||||| ||| Sbjct 1325 GTTGTTGCAGTTAAAAGAGTAGGGATCATTAAAACACCAAACCAACCAATGTAGATACGG 1266 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAAACTTTCCCA 18826 || | || || ||||| ||||| || | | |||| Sbjct 1265 TTTTCAGTTGAAGTTACCCACTCACAAAAGCGTGCCCA 1228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151317183494638