Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq26 630 9e-176 seq7 580 1e-160 seq262 86.0 8e-12 >seq26 Length=15232 Score = 630 bits (698), Expect = 9e-176 Identities = 727/986 (74%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 103174 AGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACC 103233 ||| | |||||| |||||||||||||||||||| |||||||| || |||||||| || Sbjct 2220 AGCTAAGTCAAGTGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATACCTAGGTT 2161 Query 103234 AGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGA 103293 ||| ||||||| || ||| ||||| ||||| | |||||||| ||| || | | || Sbjct 2160 AGCACGGTTGATAATGTCAGCCCATGTGTTAATTACACGACCTTGAGAGTCTACAACTGA 2101 Query 103294 CTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAA 103353 ||||| |||||||| ||||| ||||| || ||||| || | ||| | || || || Sbjct 2100 TTGGTTAAAGTTGAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAAAGCAGTAAA 2041 Query 103354 CCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAA 103413 |||||| || |||||||| | ||||||||||| Sbjct 2040 CCAGATCCCTACTACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGAGTTGTTGAA 1981 Query 103414 TGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGT 103473 || ||||||||||| |||||||| || |||||||| || || || || |||||||| || Sbjct 1980 AGAAGCGTATTGGAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAATGTTGTAAGT 1921 Query 103474 CTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACG 103533 ||||| ||||| ||||| |||||||| | ||| ||||| | ||||| || ||||| Sbjct 1920 TTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGTTGTTTCACG 1861 Query 103534 AACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGAC 103593 | | || || || || | ||||| ||||||||| ||| || |||||||| || || Sbjct 1860 GATTAATGATGAAGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACCACCAAATAC 1801 Query 103594 TCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGAC 103653 || ||||| || | ||||||||| |||||||| | ||||| || || |||||||| || Sbjct 1800 ACCTGCAACACCTAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATAC 1741 Query 103654 CAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTG 103713 | ||| |||| || || || || ||||| || |||||| | || || || ||||| Sbjct 1740 AATCATAAAGTTAAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAAAGACCCTTG 1681 Query 103714 ACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGAC 103773 ||| | ||||||| | ||| || || | ||||| ||||| || |||||||| || || Sbjct 1680 ACCGATAGGGTAGATAATGAACACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTAC 1621 Query 103774 ACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGC 103833 | ||||| |||||||| || | |||| | || | ||||| ||||| ||||| || Sbjct 1620 AGCAATCCAAGGGCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCCCATGTAGCA 1561 Query 103834 ATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCA 103893 | | | || | || |||||| |||| || | |||| ||||||||||||| || | ||| Sbjct 1560 ACATACACCTAAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGTTGTATAACCA 1501 Query 103894 CTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGA 103953 |||||| | ||| ||||||||||| || || |||||||| | ||||||||| || || | Sbjct 1500 CTCATCTAAAGAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTGCATTTGAAGT 1441 Query 103954 GGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTC 104013 |||||||| ||||||||||| |||||||| ||||||| || ||||||| || || || Sbjct 1440 AGGAACAACAGCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAGACACTGGCTC 1381 Query 104014 ACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGG 104072 |||||| |||||||| || || ||||| |||||||| || |||| || || ||| | | Sbjct 1380 ACGAATACCGTCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAATAAACACAG-TTG 1322 Query 104073 TTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGT 104132 |||| | || ||||| |||||||| | ||||| |||||||||| |||| |||||| | Sbjct 1321 TTGCAGTTAAAAGAGTAGGGATCATTAAAACACCAAACCAACCAATGTAGATACGGTTTT 1262 Query 104133 TTGTCGATGTAACCCACTCGCAGAAG 104158 || || || |||||||| || ||| Sbjct 1261 CAGTTGAAGTTACCCACTCACAAAAG 1236 >seq7 Length=22195 Score = 580 bits (642), Expect = 1e-160 Identities = 738/1016 (73%), Gaps = 0/1016 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| |||||||| ||||| ||||||| |||||||| || ||||| Sbjct 5123 AGAGCGTTTCCACGTGGTAATACCTCCTCAGGGAATACAATTTTTTCATGTGGCTGATCT 5064 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||||||||| | |||||| || || || ||||| |||||||| || ||| Sbjct 5063 TGAGCAGCCATCCATGCACGAATACCTTCGTTTAAAAGAATGTTTTTTGTGTAAAAAGTC 5004 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||||||||| | || ||||| ||||| || || ||||| || || Sbjct 5003 TCAAATTCAGGATCTTCTGCTGCACGAATTTCTTGAGATACGAAATCGTAAGCTCGTAGA 4944 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | || | ||| | || ||| | | ||| |||| | ||| | || || ||||| Sbjct 4943 TTTAATGCTAAACCTACAACACCAAGTGCACTCATCCATAAACCAGTTACTGGCACAAAT 4884 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||| || || | ||| | || || ||| || | ||||||||||||||||||| Sbjct 4883 AACATAAAAAAGTGAAGCCATCGTTTGTTTGAAAAAGCTACACCAAAGATTTGAGACCAG 4824 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 ||||| || ||||| || | || || || ||||| |||| || | | ||||| | Sbjct 4823 AAACGATTAGCTGTCACGAAAGAGTACGTTTCTTCTGCTTGAGTTGGGTTAAATGCACGG 4764 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 ||||||||||| ||||||||||||| | |||||||| || ||||| ||||||| || Sbjct 4763 AAAGTGTTTGCACCATCACCATCTTCAAAAAGAGTGTTTTCAACAGTTGCACCGTGAATC 4704 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | |||| || | || | | ||| || || |||||||| ||||| ||||| | Sbjct 4703 GCACAAAGCAAAGCAGCACCTAATACACCAGCTACTCCCATCATGTGGAAAGGGTTTAAA 4644 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 |||||||| ||||| || || | || || | ||||| ||| || | |||| |||||| Sbjct 4643 GTCCAGTTGTGGAATCCTTGGAAAAAAAGAATGAATCGAAAGATTGAAGCAATACCAAAA 4584 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 || ||||| ||||||| ||||| || | || || || | ||| ||| |||||| Sbjct 4583 CTAGGAGCAAAAAACCAACCAGACTGACCTAACGGGTAAATTAAAAAAACAGAAACAAAA 4524 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| ||||| | || ||||||||||||||||| ||||||| || | | | | ||| Sbjct 4523 ACAGCAATAGGTGCTGAAAACGCAATAGCATTGTAAGGACGAAGTCTTACTGAACGAGCA 4464 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || ||||| || | ||| |||||||| | ||||| || || || ||||| ||||| Sbjct 4463 ATTTCAAATTGGCGTAACATAAAACCAATTAAAGCAAAAGCTCCATGAAGAGCTACAAAT 4404 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 ||||| || || || | ||| | ||| | ||||| ||||||||| || |||||| Sbjct 4403 GCCCAAAGCCCGCCTAATTGAAACCAACGAGTAAAATCAGATTGAGCTTCTGGTCCCCAA 4344 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 || | | | ||||||||||||| || || || ||||| || ||||| || | |||| Sbjct 4343 AGAAACAATAAAGAATGACCCATACTGTTTGCTGGAGTTGAAACTGCAGCAGTTAAGAAA 4284 Query 102550 TTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGTC 102609 ||| |||||| ||| |||||| || | ||||| |||||||| ||||| |||| || Sbjct 4283 TTACAACCTTCTAGGAAACTAGTTGCTAAACCGTGAGTATACCAAGAAGTTACAAAAGTA 4224 Query 102610 GTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGAC 102669 | ||||| | ||| || || | || ||||| || || ||||| || | || || ||| Sbjct 4223 ATCCCAGTTAACCATCCACCTAAAGCAAGATATGCTGTAGGAAAGAGTAATAAACCTGAC 4164 Query 102670 CAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAACCA 102725 ||||| ||||| ||||| || || || | ||| ||||| | | |||||||| Sbjct 4163 CAACCTACAAAAACAAAACGGTCGCGGCGTACCCAATCATCTACTGTATCAAACCA 4108 >seq262 Length=217181 Score = 86.0 bits (94), Expect = 8e-12 Identities = 165/242 (68%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 102821 GTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAG 102880 |||||||| |||||||||||||| || ||||| || | || ||| |||| ||| Sbjct 216543 GTTGGGTAAGCCACGCAGGTCAGGACGAAACCGTTCTCGACCTGGCTGTCGTCCAAAAAT 216484 Query 102881 GATTGATCTTCTTGATCTACAGT---ACCCGATTCAATCTTACCAGCACAAGTAGAACAC 102937 || || || || | |||| || | |||||||| ||||| || | || || Sbjct 216483 GACTGGTCGCTCTGGT---CAGTCTCGCCAGCCTCAATCTTGCCAGCGCATGACGAGCAG 216427 Query 102938 GCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATA 102997 || |||||||| || || || ||||| || | || ||||| ||||| ||||| ||||| Sbjct 216426 GCTCCAGCACGGCAAGAGTATGGCAGGTCGATGCCAGCTTCCTCAGCTGCGTCAAGAATG 216367 Query 102998 TATTGATCATCCTCACAGGTGATATCATGATCACCTTCGGATGTCTTGAGTGTTACGTTA 103057 ||| || || | || || || ||||| || || | ||||| || || || || Sbjct 216366 TATGTGTCCTCGCCGCACTCAATCTCCTGATCGCCCTCAGGGGTCTTCAGGGTGACCTTG 216307 Query 103058 AA 103059 || Sbjct 216306 AA 216305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633508238891160