Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq26 574 1e-159 >seq26 Length=15232 Score = 574 bits (636), Expect = 1e-159 Identities = 724/992 (73%), Gaps = 2/992 (0%) Strand=Plus/Minus Query 21463 CCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGC 21522 |||| || || | |||||| ||||||||||| ||||| || || ||||| ||||| | | Sbjct 2227 CCACTGAAGCTAAGTCAAGTGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATAC 2168 Query 21523 CAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTA 21582 | ||||| |||||||| | |||||||||||| ||||| || || | || | || ||| Sbjct 2167 CTAGGTTAGCACGGTTGATAATGTCAGCCCATGTGTTAATTACACGACCTTGAGAGTCTA 2108 Query 21583 GCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCG 21642 | |||||||||||||||||||| || | ||| || ||||| || || | || | | Sbjct 2107 CAACTGATTGGTTAAAGTTGAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAAAG 2048 Query 21643 CAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAAT 21702 ||| |||||| || ||||| || ||||| ||||| | ||||| || | | ||| || | Sbjct 2047 CAGTAAACCAGATCCCTACTACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGAGT 1988 Query 21703 TATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATAT 21762 | || || ||| |||||||| || | || ||||| || ||||| ||||||||||| | Sbjct 1987 TGTTGAAAGAAGCGTATTGGAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAATGT 1928 Query 21763 TGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCG 21822 ||||||| ||||| |||||||| || |||||||| | ||| || | ||||| | Sbjct 1927 TGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGTTG 1868 Query 21823 TCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCAC 21882 | ||||| || | ||| || || || | ||| |||||||||||||| | | |||| Sbjct 1867 TTTCACGGATTAATGATGAAGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACCAC 1808 Query 21883 CAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCT 21942 ||||||| || || ||||| | |||||| ||||| ||||| | || ||||||||||| | Sbjct 1807 CAAATACACCTGCAACACCTAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGCTT 1748 Query 21943 GGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAG 22002 |||| || | ||| |||| || || || || || || ||||||||| | ||| ||||| Sbjct 1747 GGAATACAATCATAAAGTTAAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAAAG 1688 Query 22003 AGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGT 22062 | || || || | || || | || |||||||||||| ||||| || || || ||||||| Sbjct 1687 ACCCTTGACCGATAGGGTAGATAATGAACACAGCAGTAGCAGCTGCAACTGGTGCAGAGT 1628 Query 22063 ACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCA 22122 | || ||| ||||| || | ||| |||| || | ||| ||||| || || |||| Sbjct 1627 AAGCTACAGCAATCCAAGGGCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCCCA 1568 Query 22123 TGTAAGCAA-AGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTG 22181 |||| |||| | || || | || |||||| |||| | |||| | ||||| |||||| Sbjct 1567 TGTA-GCAACATACACCTAAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGTTG 1509 Query 22182 TACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCA 22241 || | ||| ||||| | | ||| |||||||| |||||||||||||||| || || ||| Sbjct 1508 TATAACCACTCATCTAAAGAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTGCA 1449 Query 22242 TTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCG 22301 || | ||||| || || || || || |||||||| || ||||||||||| |||| Sbjct 1448 TTTGAAGTAGGAACAACAGCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAGAC 1389 Query 22302 ACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAA 22361 || || || || || || |||||||| ||||| || || | ||||| || |||||||| Sbjct 1388 ACTGGCTCACGAATACCGTCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAATAAAC 1329 Query 22362 CAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGA 22421 |||||| || | | || || ||||| | || || ||||| || | || | | Sbjct 1328 ACAGTTGTTGCAGTTAAAAGAGTAGGGATCATTAAAACACCAAACCAACCAATGTAGATA 1269 Query 22422 CGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453 ||||| | ||| || || ||||| |||||| Sbjct 1268 CGGTTTTCAGTTGAAGTTACCCACTCACAAAA 1237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146206824579060