Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq26 634 7e-177 seq7 363 2e-95 >seq26 Length=15232 Score = 634 bits (702), Expect = 7e-177 Identities = 740/990 (75%), Gaps = 8/990 (1%) Strand=Plus/Minus Query 124046 GATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAG 124105 || |||| ||| |||||||||||||| || || | ||| ||||| || |||||||| | | Sbjct 2222 GAAGCTAAGTCAAGTGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATACCTAGG 2163 Query 124106 TTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACT 124165 || || | ||| | || ||| ||||||| | | || | || || |||||| Sbjct 2162 TTAGCACGGTTGATAATGTCAGCCCATGTGTTAATTACACGACCTTGAGAGTCTACAACT 2103 Query 124166 GATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTT 124225 |||||||||||||||||||| || | ||| |||||||| || | ||||| | || || Sbjct 2102 GATTGGTTAAAGTTGAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAAAGCAGTA 2043 Query 124226 AACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTG 124285 ||||| | | ||| || || | | |||| ||||||||| | | | |||||||||| Sbjct 2042 AACCAGATCCCTACTACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGAGTTGTTG 1983 Query 124286 AATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTAT 124345 || ||||| || ||||| || | ||| |||||||||||||| || || || |||||||| Sbjct 1982 AAAGAAGCGTATTGGAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAATGTTGTAA 1923 Query 124346 GTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCT 124405 |||||||||||||| ||||| || ||||| | ||| || | | ||| |||||||| Sbjct 1922 GTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGTTGTTTCA 1863 Query 124406 CTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAAC 124465 | ||||| || || || || | ||||||||||| || ||||| | ||| || || || Sbjct 1862 CGGATTAATGATGAAGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACCACCAAAT 1803 Query 124466 ATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAA 124525 | ||||| || ||| |||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 1802 ACACCTGCAACACCTAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGCTTGGAAT 1743 Query 124526 ACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCC 124585 || | ||||||||| ||||||||||||||||| | |||||||| ||| || || || Sbjct 1742 ACAATCATAAAGTTAAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAAAGACCCT 1683 Query 124586 TGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCA 124645 ||||| | ||||| | | ||| ||||| ||||| | |||||||| || ||||| Sbjct 1682 TGACCGATAGGGTAGATAATGAACACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCT 1623 Query 124646 ACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTAT 124705 ||| |||||||| ||||| ||||| | | | || || ||||| | | |||||||| Sbjct 1622 ACAGCAATCCAAGGGCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCCCATGTA- 1564 Query 124706 GCTGAAATACCAATAAGGAA--GTGGAAAATTACCAACTGATAAGGACCACCATTATACA 124763 || | |||| |||| || |||| | | || || || ||||||||||| || || | Sbjct 1563 GCA-ACATACACCTAAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGTTGTATA 1505 Query 124764 ACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTG 124823 |||| ||||| | || |||||||||||||||||||||||||||| || || || |||| Sbjct 1504 ACCACTCATCTAAAGAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTGCATTTG 1445 Query 124824 ATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTG 124883 | | |||||||| ||||||||||| |||||||| || || || | ||||| | |||| Sbjct 1444 AAGTAGGAACAACAGCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAGACACTG 1385 Query 124884 GTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAACA-T 124942 | || | || |||||||| || |||||||| ||||| | |||||||| || ||||| Sbjct 1384 GCTCACGAATACCGTCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAAT-AAACACA 1326 Query 124943 GCTGCTGCTGTGAGTA-AGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCT 125001 | || ||| || | | || | || ||||||| ||||||||||||||||| || || | Sbjct 1325 GTTGTTGCAGTTAAAAGAGTA-GGGATCATTAAAACACCAAACCAACCAATGTAGATACG 1267 Query 125002 GTTGTTTGTTGATGTTACCCACTCACAGAA 125031 ||| | ||||| |||||||||||||| || Sbjct 1266 GTTTTCAGTTGAAGTTACCCACTCACAAAA 1237 >seq7 Length=22195 Score = 363 bits (402), Expect = 2e-95 Identities = 708/1046 (68%), Gaps = 25/1046 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||||| || || || |||||||||| || ||||| || || Sbjct 5127 TTAAAGAGCGTTTCCACGTGGTAATACCTCCTCAGGGAATACAATTTTTTCATGTGGCTG 5068 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | ||||||||| | || ||||| || | ||||||||| || || || || Sbjct 5067 ATCTTGAGCAGCCATCCATGCACGAATACCTTCGTTTAAAAGAATGTTTTTTGTGTAAAA 5008 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||||||||| | || ||||||||||| || ||||| |||| Sbjct 5007 AGTCTCAAATTCAGGATCTTCTGCTGCACGAATTTCTTGAGATACGAAATCGTAAGCTCG 4948 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 || || | ||||| |||||| | ||| | | |||| | ||| | || || || Sbjct 4947 TAGATTTAATGCTAAACCTACAACACCAAGTGCACTCATCCATAAACCAGTTACTGGCAC 4888 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||||| | ||| |||||| ||||| || | |||||| || || || Sbjct 4887 AAATAACATAAAAAAGTGAAGCCATCGTTTGTTTGAAAAAGCTACACCAAAGATTTGAGA 4828 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 |||||| | || ||||| | | | || ||||||||| | || || || | ||||| Sbjct 4827 CCAGAAACGATTAGCTGTCACGAAAGAGTACGTTTCTTCTGCTTGAGTTGGGTTAAATGC 4768 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | |||||| | ||| | || ||| || ||||| | | || Sbjct 4767 ACGGAAAGT----GTTTGCA-----CCATCACCAT------------CTTCAAAAAGAGT 4729 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | || |||||||| ||||| ||||| || || || |||||| || || || || Sbjct 4728 GTTTTCAACAGTTGCACCGTGAATCGCACAAAGCAAAGCAGCACCTAATACACCAGCTAC 4669 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 ||||||||||| || || || || || ||||||||| ||||| | || | || | Sbjct 4668 TCCCATCATGTGGAAAGGGTTTAAAGTCCAGTTGTGGAATCCTTGGAAAAAAAGAATGAA 4609 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 |||||||||| || | ||| || || || || ||||||| |||||||| || Sbjct 4608 TCGAAAGATTGAAGCAATACCAAAACTAGGAGCAAAAAACCAACCAGACTGACCTAACGG 4549 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 || || | ||| | | || || || ||| || || || || | || ||||| Sbjct 4548 GTAAATTAAAAAAACAGAAACAAAAACAGCAATAGGTGCTGAAAACGCAATAGCATTGTA 4489 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||| | || | ||| | || || |||||||| | | ||| ||||| || | | Sbjct 4488 AGGACGAAGTCTTACTGAACGAGCAATTTCAAATTGGCGTAACATAAAACCAATTAAAGC 4429 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 ||| ||||||| | |||||||| ||| || || || | ||| ||||||||| | | Sbjct 4428 AAAAGCTCCATGAAGAGCTACAAATGCCCAAAGCCCGCCTAATTGAAACCAACGA--GTA 4371 Query 123646 TGATC--CTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCA 123703 ||| ||| ||||| ||||||||||| |||| | | ||||||||| || | Sbjct 4370 AAATCAGATTGAGCTTCTGGTCCCCAAAGAAACAATAAAGAATGACCCATACTGTTTGCT 4311 Query 123704 GGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCA 123763 || || || ||||| || |||||||| || || || || | || ||| | ||| Sbjct 4310 GGAGTTGAAACTGCAGCAGTTAAGAAATTACAACCTTCTAGGAAACTAGTTGCTAAACCG 4251 Query 123764 TGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATAC 123823 || |||||||| || || || || ||| | || ||||| ||||| | | ||||| Sbjct 4250 TGAGTATACCAAGAAGTTACAAAAGTAATCCCAGTTAACCATCCACCTAAAGCAAGATAT 4191 Query 123824 GCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAAC 123883 || ||| | ||||| | ||| ||||| |||| || |||||||| || | || | Sbjct 4190 GCTGTAGGAAAGAGTAATAAACCTGACCAACCTACAAAAACAAAACGGTCGCGGCGTACC 4131 Query 123884 CAGTCGTCAAGAACATCAAACCAACC 123909 || || || | |||||||||||| Sbjct 4130 CAATCATCTACTGTATCAAACCAACC 4105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578993500226040