Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq26 744 0.0 seq7 434 1e-116 >seq26 Length=15232 Score = 744 bits (824), Expect = 0.0 Identities = 754/977 (77%), Gaps = 10/977 (1%) Strand=Plus/Minus Query 26745 TGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAG 26804 ||| || || || ||||| | |||||| || ||||| | || || ||||||||||| Sbjct 2208 TGGGAAGTTGTGAGCGTTACGTTCGTGCATTACCTCCATACCTAGGTTAGCACGGTTGAT 2149 Query 26805 AACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTT 26864 || ||| ||||| ||||| | |||||||| || || || | || || || || ||||| Sbjct 2148 AATGTCAGCCCATGTGTTAATTACACGACCTTGAGAGTCTACAACTGATTGGTTAAAGTT 2089 Query 26865 GAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAAC 26924 ||||||||| || || || ||||| || |||| ||| | || || |||||||| || || Sbjct 2088 GAAACCGTTTAGGTTAAATGCCATAGTTGATATACCTAAAGCAGTAAACCAGATCCCTAC 2029 Query 26925 AACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTG 26984 || ||||||||||| | ||||||||| || ||||||||||||||||| ||||| ||||| Sbjct 2028 TACTGGCCATGCAGCTAAGAAGAAGTGTAAAGAACGTGAGTTGTTGAAAGAAGCGTATTG 1969 Query 26985 GAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTG 27044 ||| |||||||| || ||||| || || || || || |||||||| || ||||||||||| Sbjct 1968 GAAAATCAAACGCCCAAAGTAACCGTGCGCAGCAACAATGTTGTAAGTTTCTTCTTCTTG 1909 Query 27045 ACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGA 27104 |||||| || ||||| | ||| || | | ||||| || ||||||| | ||| || Sbjct 1908 ACCGAATTTGTAACCTTCGTTAGCAGATTGGTTCTCAGTTGTTTCACGGATTAATGATGA 1849 Query 27105 TGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACC 27164 || || | || |||||||||||||||||||| ||||| ||||| || |||||||| Sbjct 1848 AGTTACTAATGAACCATGCATAGCAGAGAAAAGAGAACCACCAAATACACCTGCAACACC 1789 Query 27165 GAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTT 27224 | ||||||||| |||||||| | ||| ||||| || || |||||||||| ||| |||| Sbjct 1788 TAACATGTGGAAAGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATACAATCATAAAGTT 1729 Query 27225 AAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATA 27284 ||||||||| |||||||| | |||||| | || ||||| |||||||||| ||| || Sbjct 1728 AAAAGTACCTGAGATACCTAAGGGCATACCGTCACTAAAAGACCCTTGACCGATAGGGTA 1669 Query 27285 GACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGG 27344 || | ||| || ||| | ||||| || ||||| ||||| || |||||| ||||| || Sbjct 1668 GATAATGAACACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGCAATCCAAGG 1609 Query 27345 ACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATGCCGAT 27404 |||||||||||||| | || || ||||| ||||| ||||| || ||| | || | | Sbjct 1608 GCGCATACCTAAACGGAAAGAAAGCTCCCATTCACGCCCCATGTA-GCA-ACATACACCT 1551 Query 27405 AAGGAA--GTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGT 27462 ||| || |||| | || || | |||| ||||||||||||| || ||||||||||| | Sbjct 1550 AAGAAAAAGTGGCATACAACTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAA 1491 Query 27463 GATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACT 27522 || |||||||||||||||||||||||||| | ||| |||||||||||| | || ||||| Sbjct 1490 GAAGCTGCTTCCCAGATTGGGTAGAAGTGTAAACCAATTGCATTTGAAGTAGGAACAACA 1431 Query 27523 GCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCG 27582 |||||||| || |||||||| || |||| || ||||||| || || |||||||||||| Sbjct 1430 GCACCAGAGATAATGTTGTTTCCGTACAACAGGGAACCAGACACTGGCTCACGAATACCG 1371 Query 27583 TCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCAGACAGTTGCTGC---T 27639 || || || || || || ||||| | ||||| | ||| || ||||||| ||| | Sbjct 1370 TCGATGTCCACAGGAGGAGCTGCTACAAATGCAATAATAAAC---ACAGTTGTTGCAGTT 1314 Query 27640 AACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGTTGAT 27699 || || || |||||||| | ||||| |||||||||| || | |||||| | |||||| Sbjct 1313 AAAAGAGTAGGGATCATTAAAACACCAAACCAACCAATGTAGATACGGTTTTCAGTTGAA 1254 Query 27700 GTCACCCACTCACAGAA 27716 || ||||||||||| || Sbjct 1253 GTTACCCACTCACAAAA 1237 >seq7 Length=22195 Score = 434 bits (480), Expect = 1e-116 Identities = 718/1031 (70%), Gaps = 14/1031 (1%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCA---ATTACAGGAAAGTTTTCGTGTG 23442 || ||||||| || || | ||| | | |||||| | |||| | ||||| |||| Sbjct 5128 ATTAAAGAGCGTTTCCACGTGGTAATACCTCCTCAGGGAATACA---ATTTTTTCATGTG 5072 Query 23443 GTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGT 23502 | || || || ||||||| |||| | || | ||| || | ||| ||||| |||| Sbjct 5071 GCTGATCTTGAGCAGCCATCCATGCACGAATACCTTCGTTTAAAAGAATGTTTTTTGTGT 5012 Query 23503 AGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAG 23562 | || |||||| | | |||||| || |||||||| |||||| || ||||| |||| Sbjct 5011 AAAAAGTCTCAAATTCAGGATCTTCTGCTGCACGAATTTCTTGAGATACGAAATCGTAAG 4952 Query 23563 CACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAG 23622 | || ||||| | || | || | | |||| | | | ||| | ||| | || | Sbjct 4951 CTCGTAGATTTAATGCTAAACCTACAACACCAAGTGCACTCATCCATAAACCAGTTACTG 4892 Query 23623 GAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTT 23682 | ||||| |||||||| ||||| | ||| || || || ||| || || || ||||||| Sbjct 4891 GCACAAATAACATAAAAAAGTGAAGCCATCGTTTGTTTGAAAAAGCTACACCAAAGATTT 4832 Query 23683 GTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGA 23742 | ||||| |||||||| ||||| || | || || || || || | ||||| | | | Sbjct 4831 GAGACCAGAAACGATTAGCTGTCACGAAAGAGTACGTTTCTTCTGCTTGAGTTGGGTTAA 4772 Query 23743 ACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTC 23802 | || ||||||||||| || ||||||||| | || || || || ||||| | | Sbjct 4771 ATGCACGGAAAGTGTTTGCACCATCACCATCTTCAAAAAGAGTGTTTTCAACAGTTGCAC 4712 Query 23803 CATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGG 23862 | ||||| ||| | || | || | || | || |||||| ||||||||||| ||||| | Sbjct 4711 CGTGAATCGCACAAAGCAAAGCAGCACCTAATACACCAGCTACTCCCATCATGTGGAAAG 4652 Query 23863 GGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAA 23922 |||| | |||||||| || || || |||| || |||| ||| | || || | |||| Sbjct 4651 GGTTTAAAGTCCAGTTGTGGAATCCTTGGAAAAAAAGAATGAATCGAAAGATTGAAGCAA 4592 Query 23923 CACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAG 23982 ||| ||||| || ||||| |||||| ||||| || || || || || | || |||| Sbjct 4591 TACCAAAACTAGGAGCAAAAAACCAACCAGACTGACCTAACGGGTAAATTAAAAAAACAG 4532 Query 23983 ACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTA 24042 | || || ||||||||||| | ||||| ||||| |||||||| ||||| | || | | Sbjct 4531 AAACAAAAACAGCAATAGGTGCTGAAAACGCAATAGCATTGTAAGGACGAAGTCTTACTG 4472 Query 24043 GACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAG 24102 ||| || | |||||| || |||||||||||||| || | ||||| || || || |||| Sbjct 4471 AACGAGCAATTTCAAATTGGCGTAACATAAAACCAATTAAAGCAAAAGCTCCATGAAGAG 4412 Query 24103 CAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAG 24162 | ||||| | ||||||||| || | ||| | ||| || ||| || ||||| || | Sbjct 4411 CTACAAATGCCCAAAGCCCGCCTAATTGAAACCAACGAGTAAAATCAGATTGAGCTTCTG 4352 Query 24163 GACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCG 24222 | |||||||| | | | ||||||||||||| || || || || || || || || | Sbjct 4351 GTCCCCAAAGAAACAATAAAGAATGACCCATACTGTTTGCTGGAGTTGAAACTGCAGCAG 4292 Query 24223 -TAAGAAAGTTAGCACCCTCAAGATAGGAACTA---GCAAGTCCATGGGTGTACCAACTC 24278 ||||||| ||| ||| || || | ||||| || | || || || |||||| Sbjct 4291 TTAAGAAA-TTACAACCTTCTAG---GAAACTAGTTGCTAAACCGTGAGTATACCAAGAA 4236 Query 24279 GTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGT 24338 || ||||||| | ||||| | ||| || || | |||||||| || || |||| ||| Sbjct 4235 GTTACAAAAGTAATCCCAGTTAACCATCCACCTAAAGCAAGATATGCTGTAGGAAAGAGT 4176 Query 24339 AGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATG 24398 | | || |||||||| ||||| ||||| || || || ||||| || || | | Sbjct 4175 AATAAACCTGACCAACCTACAAAAACAAAACGGTCGCGGCGTACCCAATCATCTACTGTA 4116 Query 24399 TCAAACCATCC 24409 |||||||| || Sbjct 4115 TCAAACCAACC 4105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665488768253640